Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 1
- nucleus 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 93.38 | 81.35 |
| KRH68150 | Soybean | nucleus | 56.73 | 56.73 |
| KRH71547 | Soybean | nucleus | 54.08 | 56.32 |
| KRG96409 | Soybean | nucleus | 57.4 | 48.6 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 63.36 | 47.99 |
| PGSC0003DMT400063501 | Potato | nucleus | 34.66 | 43.61 |
| PGSC0003DMT400004390 | Potato | nucleus | 36.87 | 36.62 |
| GSMUA_Achr8P10040_001 | Banana | nucleus | 35.1 | 35.57 |
| GSMUA_Achr11P... | Banana | nucleus | 30.46 | 33.33 |
| PGSC0003DMT400021189 | Potato | nucleus | 34.44 | 33.33 |
| PGSC0003DMT400013174 | Potato | nucleus | 36.64 | 32.81 |
| PGSC0003DMT400027159 | Potato | nucleus | 35.1 | 32.32 |
| PGSC0003DMT400033039 | Potato | nucleus, plastid | 36.87 | 31.81 |
| PGSC0003DMT400024272 | Potato | nucleus | 34.66 | 31.72 |
| PGSC0003DMT400049788 | Potato | nucleus | 32.67 | 31.03 |
| PGSC0003DMT400075837 | Potato | nucleus | 35.1 | 30.7 |
| PGSC0003DMT400020945 | Potato | nucleus | 33.77 | 30.54 |
| PGSC0003DMT400008694 | Potato | nucleus, plastid | 35.32 | 30.3 |
| TraesCS3D01G449900.1 | Wheat | nucleus | 33.55 | 29.86 |
| Os01t0935000-01 | Rice | nucleus | 30.91 | 29.41 |
| PGSC0003DMT400012504 | Potato | nucleus | 32.45 | 29.28 |
| PGSC0003DMT400006385 | Potato | nucleus | 34.88 | 29.21 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 32.89 | 29.16 |
| EES04172 | Sorghum | nucleus | 33.11 | 28.85 |
| Zm00001d042202_P001 | Maize | nucleus | 32.89 | 28.38 |
| PGSC0003DMT400079735 | Potato | nucleus, plastid | 23.84 | 24.71 |
| PGSC0003DMT400069306 | Potato | nucleus | 22.3 | 24.57 |
| PGSC0003DMT400040064 | Potato | nucleus | 36.2 | 22.28 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | UniProt:M1ASZ9 | PFAM:PF00096 | EnsemblPlantsGene:PGSC0003DMG400011365 | PGSC:PGSC0003DMG400011365 | EnsemblPlants:PGSC0003DMT400029550 |
| ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF34 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI0002967458 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : |
Description
Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400011365]
Coordinates
chr9:+:52306947..52309092
Molecular Weight (calculated)
50635.4 Da
IEP (calculated)
8.868
GRAVY (calculated)
-0.771
Length
453 amino acids
Sequence
(BLAST)
(BLAST)
001: MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYICP EPTCVHHNRA RALGDLTGIK KHYSRKHGEK KWKCDKCSKK YAVQSDWKAH
101: QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNIE HNMHSGQMHE LMSSNASLGL SEFNNFDPKN SLKSLPQEFL PFPFKSMTNN
201: MAPGGMFSTT SGNLFGNSPR SVASSSSGLQ LSSNIPSNFN YLQDNGKNGV AQGQGQISSV PMSATALLQK AAQMGATASS SINSPMMQKS FVTSAMAGPD
301: ITITRPSPNY ENFQMQQDNN NHQNQNQNHQ LNLAAVMNDM GIYSGILMSN DQNNDAGYIK NVTEVLDCDN HNHSTNDGVR NQTMMVQNGS NDMLTVDFLG
401: IGGASRTPIS NLQEQQRFEA AINQQRLQAT SSFHHQQNIN NNSGLEKPIW DNV
101: QKTCGTREYK CDCGTIFSRR DSFITHRAFC DALAEENNKV NQGLMNNNIE HNMHSGQMHE LMSSNASLGL SEFNNFDPKN SLKSLPQEFL PFPFKSMTNN
201: MAPGGMFSTT SGNLFGNSPR SVASSSSGLQ LSSNIPSNFN YLQDNGKNGV AQGQGQISSV PMSATALLQK AAQMGATASS SINSPMMQKS FVTSAMAGPD
301: ITITRPSPNY ENFQMQQDNN NHQNQNQNHQ LNLAAVMNDM GIYSGILMSN DQNNDAGYIK NVTEVLDCDN HNHSTNDGVR NQTMMVQNGS NDMLTVDFLG
401: IGGASRTPIS NLQEQQRFEA AINQQRLQAT SSFHHQQNIN NNSGLEKPIW DNV
001: MATNRFICDV CNKGFQREQN LQLHRRGHNL PWKLKQKSTK EVKRKVYLCP EPTCVHHDPS RALGDLTGIK KHYYRKHGEK KWKCEKCSKR YAVQSDWKAH
101: SKTCGTKEYR CDCGTIFSRR DSYITHRAFC DALIQETARN PTVSFTSMTA ASSGVGSGGI YGRLGGGSAL SHHHLSDHPN FGFNPLVGYN LNIASSDNRR
201: DFIPQSSNPN FLIQSASSQG MLNTTPNNNN QSFMNQHGLI QFDPVDNINL KSSGTNNSFF NLGFFQENTK NSETSLPSLY STDVLVHHRE ENLNAGSNVS
301: ATALLQKATQ MGSVTSNDPS ALFRGLASSS NSSSVIANHF GGGRIMENDN NGNLQGLMNS LAAVNGGGGS GGSIFDVQFG DNGNMSGSDK LTLDFLGVGG
401: MVRNVNRGGG GGGRGSARGG VSLDGEAKFP EQNYPFGRG
101: SKTCGTKEYR CDCGTIFSRR DSYITHRAFC DALIQETARN PTVSFTSMTA ASSGVGSGGI YGRLGGGSAL SHHHLSDHPN FGFNPLVGYN LNIASSDNRR
201: DFIPQSSNPN FLIQSASSQG MLNTTPNNNN QSFMNQHGLI QFDPVDNINL KSSGTNNSFF NLGFFQENTK NSETSLPSLY STDVLVHHRE ENLNAGSNVS
301: ATALLQKATQ MGSVTSNDPS ALFRGLASSS NSSSVIANHF GGGRIMENDN NGNLQGLMNS LAAVNGGGGS GGSIFDVQFG DNGNMSGSDK LTLDFLGVGG
401: MVRNVNRGGG GGGRGSARGG VSLDGEAKFP EQNYPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.