CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042202_P001	Maize	nucleus	79.04	78.29
Os01t0935000-01	Rice	nucleus	60.19	65.76
TraesCS3D01G449900.1	Wheat	nucleus	55.96	57.17
TraesCS3B01G497200.1	Wheat	nucleus	55.96	56.95
GSMUA_Achr11P...	Banana	nucleus	40.77	51.21
EES02157	Sorghum	nucleus	35.38	38.25
EES02307	Sorghum	nucleus	35.77	37.35
PGSC0003DMT400063501	Potato	nucleus	25.77	37.22
EES00944	Sorghum	nucleus	33.85	36.59
Solyc01g099340.2.1	Tomato	nucleus	29.62	36.32
KXG38489	Sorghum	nucleus	29.62	35.98
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	36.54	35.78
KRG96409	Soybean	nucleus	36.54	35.51
KRH71547	Soybean	nucleus	29.62	35.4
KRG92880	Soybean	nucleus	35.96	35.35
KRH33908	Soybean	nucleus, plastid	36.15	35.21
KRH68532	Soybean	nucleus	34.42	34.96
KRH68150	Soybean	nucleus	30.19	34.66
KRG96824	Soybean	nucleus	33.65	34.52
EER95332	Sorghum	nucleus	34.04	33.71
Solyc09g074780.2.1	Tomato	nucleus, plastid	33.65	33.65
PGSC0003DMT400029550	Potato	nucleus	28.85	33.11
KXG30322	Sorghum	nucleus	29.04	31.79
EES05153	Sorghum	nucleus	29.81	31.57
OQU89911	Sorghum	nucleus, plastid	32.31	31.52
KXG25416	Sorghum	nucleus	33.46	31.46
VIT_07s0104g01620.t01	Wine grape	nucleus	35.77	31.1
EES11271	Sorghum	nucleus	35.19	30.55
KXG31026	Sorghum	nucleus	33.85	29.58
KXG39813	Sorghum	nucleus, plastid	24.23	27.45
KXG36163	Sorghum	nucleus	30.0	26.8
EER96827	Sorghum	nucleus	24.42	25.45
EES13982	Sorghum	nucleus	25.0	24.25
EER97442	Sorghum	nucleus	33.08	21.94

Protein Annotations

EnsemblPlants:EES04172	EnsemblPlantsGene:SORBI_3003G417500	EntrezGene:8059423	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF44
PFscan:PS50157	ProteinID:EES04172	ProteinID:EES04172.1	RefSeq:XP_002459052.1	ScanProsite:PS00028	SEG:seg
SUPFAM:SSF57667	UniParc:UPI0001A856A3	UniProt:C5XH47	MapMan:15.5.15	:	:

Description

hypothetical protein

Coordinates

chr3:-:72328869..72333246

Molecular Weight (calculated)

54703.0 Da

IEP (calculated)

8.122

GRAVY (calculated)

-0.422

Length

520 amino acids

Sequence
(BLAST)

001: MSGGSSSLSS VSNTPREVEE KFLQYHIQPL LGGPMEMQNG GGGGDLQHVI GGPSEPLPPA PPPPTVKKKR SLPGTPDPSA EVIALSPRTL MATNRFVCEI
101: CHKGFQRDQN LQLHRRGHNL PWKLRQRGGA GADGPGGGPP RKRVYVCPEA SCVHHNPARA LGDLTGIKKH YCRKHGEKKW KCERCAKRYA VHSDWKAHAK
201: VCGTREYKCD CGTVFSRRDS FVTHRAFCDA LAQENNKLSQ PMNMATVASA LQGQAAPHHL APPSSSSQPE DDLDAAAGED NDDDFALDTK SPKLRMLPTM
301: SDADATAANQ LLLPPLSMAG CMLSSLQHGA ARPAPPTPPS PATFFSGVKA GLDGPSSSCD PSMGGAFSPP GASASMSATA LLQKAAEMGA TAGGYGVGAG
401: FSTVGFGPMI GGPPVMGPFG PLKTPAVLEP FDGLPFGQTH LVGLDVGRLL PGQHFYGSSH GHGHGVGSMT RAIGSLMHGG QQMDHRRPDD VRVVDYLGVD
501: DQRSCFSGVS PFGPDLGPWS

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.