CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 5
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04118	Canola	nucleus	19.89	89.08
CDY09390	Canola	nucleus	19.89	89.08
Zm00001d021403_P001	Maize	nucleus	78.61	86.57
CDY53540	Canola	nucleus	24.39	67.01
CDY04117	Canola	nucleus	26.27	65.42
KRG89168	Soybean	nucleus, plastid	36.77	56.32
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	37.15	54.4
GSMUA_Achr4P04310_001	Banana	nucleus	39.77	44.82
KXG36163	Sorghum	nucleus	48.59	44.5
KRH49485	Soybean	nucleus	45.03	44.2
KXG25416	Sorghum	nucleus	45.59	43.94
VIT_01s0010g02100.t01	Wine grape	nucleus	47.09	43.88
KRG89167	Soybean	nucleus, plastid	44.65	43.35
KRH49489	Soybean	nucleus, plastid	42.78	42.78
KRG91985	Soybean	nucleus	44.47	42.32
KRH34792	Soybean	nucleus	43.15	41.44
KRG90705	Soybean	nucleus	43.53	40.92
KRH36039	Soybean	nucleus	42.96	40.11
PGSC0003DMT400075837	Potato	nucleus	38.84	39.96
Solyc04g008500.2.1	Tomato	nucleus	38.46	39.65
CDY45271	Canola	nucleus	30.58	39.18
Bra026204.1-P	Field mustard	nucleus, plastid	33.02	39.11
CDY59418	Canola	nucleus	30.21	38.98
CDY45270	Canola	nucleus	32.65	38.67
EES02307	Sorghum	nucleus	36.02	38.55
GSMUA_Achr11P...	Banana	nucleus	36.77	38.36
GSMUA_Achr11P...	Banana	nucleus	38.27	38.27
EES02157	Sorghum	nucleus	34.52	38.25
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	47.28	38.12
CDY17440	Canola	nucleus	33.77	37.66
EES11271	Sorghum	nucleus	42.03	37.4
CDY15814	Canola	nucleus	32.65	36.79
AT2G02080.3	Thale cress	nucleus, plastid	35.46	36.63
KXG31026	Sorghum	nucleus	40.34	36.13
CDY03081	Canola	nucleus	35.46	36.07
Bra026203.1-P	Field mustard	nucleus, plastid	31.33	35.99
CDX81653	Canola	nucleus	31.52	35.97
Bra026819.1-P	Field mustard	nucleus	31.52	35.97
Bra026616.1-P	Field mustard	nucleus	34.33	35.81
AT1G14580.3	Thale cress	nucleus	32.27	35.76
KXG38489	Sorghum	nucleus	28.71	35.75
CDY17615	Canola	nucleus	35.27	35.67
CDY17614	Canola	nucleus, plastid	34.33	35.67
CDY03080	Canola	nucleus, plastid	34.52	35.66
Bra024833.1-P	Field mustard	plastid	34.15	35.48
EES00944	Sorghum	nucleus	31.89	35.34
Bra024834.1-P	Field mustard	nucleus, plastid	35.27	34.06
EER95332	Sorghum	nucleus	33.4	33.9
CDY09391	Canola	nucleus	36.02	33.86
Bra023223.1-P	Field mustard	plastid	30.21	33.54
KXG30322	Sorghum	nucleus	29.83	33.47
CDY15811	Canola	nucleus	35.46	33.27
Bra026617.1-P	Field mustard	nucleus	36.21	32.71
Bra040974.1-P	Field mustard	nucleus, plastid	35.83	32.65
EES05153	Sorghum	nucleus	30.02	32.59
EES04172	Sorghum	nucleus	31.52	32.31
AT2G02070.2	Thale cress	nucleus	36.21	32.06
CDY12268	Canola	nucleus	26.45	31.61
CDY68983	Canola	nucleus	21.76	29.67
KXG39813	Sorghum	nucleus, plastid	22.7	26.36
EER96827	Sorghum	nucleus	22.7	24.25
EES13982	Sorghum	nucleus	22.51	22.39
EER97442	Sorghum	nucleus	31.71	21.56

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	EntrezGene:8077242	UniProt:C5X7R9	ProteinID:EER99334.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	EnsemblPlants:OQU89911	ProteinID:OQU89911
ProteinID:OQU89911.1	PFAM:PF12171	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF66
SMART:SM00355	EnsemblPlantsGene:SORBI_3002G293000	SUPFAM:SSF57667	UniParc:UPI0001A83E98	RefSeq:XP_002462813.1	InterPro:Znf_C2H2_jaz
InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:67062789..67068872

Molecular Weight (calculated)

55066.3 Da

IEP (calculated)

9.308

GRAVY (calculated)

-0.448

Length

533 amino acids

Sequence
(BLAST)

001: MAAASSAPFF GLADTQMQPQ AGSSSLQQNS TAAPDVAAPP PKKKRNQPGN PNPDAEVIAL SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK
101: QKNPKDVRRR VYLCPEPTCV HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCNKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT HRAFCDALAR
201: ESAQMPPLGA GLYAGPGSMS LGLSGTVAQM HGFADQAGQS SSAAAAQFDH IMPSSSGSSS MFRSQASASS PSYFLGGGAP PAAQDFSEDG SQGSQGPLLH
301: GKAPFHGLMQ LPEQHHQPGP GSSNAAVANG NNSLLNLGFF SAGNNGGTSG SQDARLVIQD QFNVTGGGGG SAEHGNNLMA SLGSHLGGGF PSLYNNSSPS
401: AGLAQNSATA LLMKAAQMGS TSSTAHNNGT TSTLFRAVSF SAAAAAAASG QGTSRAAGEG TTTSHEAHFH ELIMNSLAGG GGAAGTGGFS GATAGFGGVD
501: DGKLSTRDFL GVGRGAMAPP GLHIGALDPA QMK

Best Arabidopsis Sequence Match ( AT1G14580.1 )
(BLAST)

001: MSSSYNTIAL SSTPTFLLSS AAAGPGPNNF NRQEAAMTMV QQQPTSSVAP PPKKRRNQPG NPNPDAEVIA LSPKTIMATN RFLCEVCNKG FQREQNLQLH
101: RRGHNLPWKL KQKSNKEVRR KVYLCPEPSC VHHDPARALG DLTGIKKHYY RKHGEKKWKC DKCSKRYAVQ SDWKAHSKTC GTKEYRCDCG TIFSRRDSYI
201: THRAFCDALI QESARNPTVS FTAMAAGGGG GARHGFYGGA SSALSHNHFG NNPNSGFTPL AAAGYNLNRS SSDKFEDFVP QATNPNPGPT NFLMQCSPNQ
301: GLLAQNNQSL MNHHGLISLG DNNNNNHNFF NLAYFQDTKN SDQTGVPSLF TNGADNNGPS ALLRGLTSSS SSSVVVNDFG DCDHGNLQGL MNSLAATTDQ
401: QGRSPSLFDL HFANNLSMGG SDRLTLDFLG VNGGIVSTVN GRGGRSGGPP LDAEMKFSHP NHPYGKA

Arabidopsis Description

C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.