Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY53540 | Canola | nucleus | 35.34 | 87.63 |
| CDY59418 | Canola | nucleus | 71.31 | 83.05 |
| CDX81653 | Canola | nucleus | 79.63 | 82.01 |
| Bra026819.1-P | Field mustard | nucleus | 78.79 | 81.16 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 65.7 | 61.24 |
| KRG89168 | Soybean | nucleus, plastid | 34.1 | 47.13 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 33.89 | 44.78 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 35.14 | 39.67 |
| CDY45271 | Canola | nucleus | 34.3 | 39.66 |
| AT2G02070.2 | Thale cress | nucleus | 48.86 | 39.04 |
| CDY45270 | Canola | nucleus | 35.97 | 38.44 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 35.97 | 38.44 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 32.02 | 38.12 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 30.98 | 37.44 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 37.21 | 36.83 |
| AT5G44160.1 | Thale cress | nucleus | 35.55 | 36.7 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 35.55 | 36.62 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 34.93 | 36.21 |
| AT3G50700.1 | Thale cress | nucleus | 33.68 | 35.84 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 32.02 | 35.48 |
| KRH49489 | Soybean | nucleus, plastid | 39.29 | 35.46 |
| AT1G55110.2 | Thale cress | nucleus | 33.47 | 35.38 |
| AT3G45260.1 | Thale cress | nucleus | 32.64 | 35.2 |
| GSMUA_Achr10P... | Banana | nucleus | 34.93 | 35.07 |
| PGSC0003DMT400075837 | Potato | nucleus | 37.01 | 34.36 |
| Os09t0555700-02 | Rice | nucleus | 38.05 | 34.21 |
| AT1G03840.1 | Thale cress | nucleus | 35.97 | 34.19 |
| KRH49485 | Soybean | nucleus | 38.05 | 33.7 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 34.3 | 33.67 |
| Solyc04g008500.2.1 | Tomato | nucleus | 36.17 | 33.66 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 39.92 | 33.57 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 32.85 | 33.4 |
| AT5G66730.1 | Thale cress | nucleus | 34.72 | 33.4 |
| Os08t0554400-02 | Rice | nucleus | 38.05 | 33.39 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 37.84 | 33.33 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 37.63 | 33.21 |
| AT5G60470.2 | Thale cress | nucleus | 31.6 | 33.12 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 37.63 | 33.09 |
| AT5G03150.1 | Thale cress | nucleus | 34.51 | 33.0 |
| GSMUA_Achr11P... | Banana | nucleus | 36.38 | 32.83 |
| KXG25416 | Sorghum | nucleus | 37.63 | 32.73 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 33.26 | 32.72 |
| KRG90705 | Soybean | nucleus | 38.46 | 32.63 |
| KRG89167 | Soybean | nucleus, plastid | 37.01 | 32.42 |
| KRH36039 | Soybean | nucleus | 38.46 | 32.4 |
| OQU89911 | Sorghum | nucleus, plastid | 35.76 | 32.27 |
| Zm00001d021403_P001 | Maize | nucleus | 32.43 | 32.23 |
| GSMUA_Achr4P05240_001 | Banana | nucleus | 33.47 | 32.2 |
| Bra023223.1-P | Field mustard | plastid | 32.02 | 32.08 |
| KRH34792 | Soybean | nucleus | 37.01 | 32.07 |
| KRG91985 | Soybean | nucleus | 37.01 | 31.79 |
| GSMUA_Achr11P... | Banana | nucleus | 33.68 | 31.7 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 35.34 | 31.08 |
| CDY12268 | Canola | nucleus | 28.27 | 30.49 |
| EES11271 | Sorghum | nucleus | 37.63 | 30.22 |
| GSMUA_Achr11P... | Banana | nucleus | 35.55 | 30.21 |
| AT3G13810.2 | Thale cress | nucleus | 32.22 | 30.16 |
| KXG31026 | Sorghum | nucleus | 37.21 | 30.08 |
| Zm00001d026113_P006 | Maize | nucleus | 37.42 | 30.05 |
| Zm00001d017560_P001 | Maize | nucleus | 36.17 | 29.9 |
| Zm00001d031992_P001 | Maize | nucleus | 37.42 | 29.75 |
| TraesCS6D01G235800.1 | Wheat | nucleus | 35.55 | 29.58 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 35.34 | 29.51 |
| TraesCS6A01G254500.1 | Wheat | nucleus | 35.34 | 29.41 |
| Os04t0566400-02 | Rice | nucleus | 37.42 | 29.36 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 37.21 | 29.25 |
| Os02t0672100-01 | Rice | nucleus | 36.8 | 28.78 |
| Zm00001d002654_P003 | Maize | nucleus | 37.63 | 28.59 |
| CDY68983 | Canola | nucleus | 22.45 | 27.62 |
| TraesCS2A01G403200.2 | Wheat | nucleus | 37.42 | 27.15 |
| TraesCS2D01G400300.2 | Wheat | nucleus | 37.21 | 27.04 |
| AT1G25250.3 | Thale cress | nucleus | 21.21 | 26.49 |
| KXG36163 | Sorghum | nucleus | 30.98 | 25.6 |
| Zm00001d006319_P001 | Maize | nucleus | 29.11 | 25.04 |
| AT2G01940.3 | Thale cress | nucleus | 22.25 | 23.99 |
| AT1G68130.1 | Thale cress | nucleus | 20.58 | 23.63 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | EntrezGene:838020 | UniProt:A0A1P8ANA3 | ProteinID:AAF63168.1 | ProteinID:AEE29186.1 |
| ProteinID:AEE29187.1 | ProteinID:ANM58125.1 | ArrayExpress:AT1G14580 | EnsemblPlantsGene:AT1G14580 | RefSeq:AT1G14580 | TAIR:AT1G14580 |
| RefSeq:AT1G14580-TAIR-G | EnsemblPlants:AT1G14580.3 | EMBL:AY091041 | EMBL:AY133766 | Unigene:At.24519 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008356 | GO:GO:0009058 | GO:GO:0009507 | GO:GO:0009536 |
| GO:GO:0009987 | GO:GO:0046872 | InterPro:IPR013087 | RefSeq:NP_001184994.1 | RefSeq:NP_001320583.1 | RefSeq:NP_172910.2 |
| PFAM:PF00096 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF66 | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0008487D78 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : |
Description
C2H2-like zinc finger protein [Source:TAIR;Acc:AT1G14580]
Coordinates
chr1:+:4989562..4992734
Molecular Weight (calculated)
52247.1 Da
IEP (calculated)
9.483
GRAVY (calculated)
-0.682
Length
481 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLCSFSKNR PAEKMSSSYN TIALSSTPTF LLSSAAAGPG PNNFNRQEAA MTMVQQQPTS SVAPPPKKRR NQPGNPNPDA EVIALSPKTI MATNRFLCEV
101: CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVRRKVYLCP EPSCVHHDPA RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR
201: CDCGTIFSRR DSYITHRAFC DALIQESARN PTVSFTAMAA GGGGGARHGF YGGASSALSH NHFGNNPNSG FTPLAAAGYN LNRSSSDKFE DFVPQATNPN
301: PGPTNFLMQC SPNQGLLAQN NQSLMNHHGL ISLGDNNNNN HNFFNLAYFQ DTKNSDQTGV PSLFTNGADN NGPSALLRGL TSSSSSSVVV NDFGDCDHGN
401: LQGLMNSLAA TTDQQGRSPS LFDLHFANNL SMGGSDRLTL DFLGVNGGIV STVNGRGGRS GGPPLDAEMK FSHPNHPYGK A
101: CNKGFQREQN LQLHRRGHNL PWKLKQKSNK EVRRKVYLCP EPSCVHHDPA RALGDLTGIK KHYYRKHGEK KWKCDKCSKR YAVQSDWKAH SKTCGTKEYR
201: CDCGTIFSRR DSYITHRAFC DALIQESARN PTVSFTAMAA GGGGGARHGF YGGASSALSH NHFGNNPNSG FTPLAAAGYN LNRSSSDKFE DFVPQATNPN
301: PGPTNFLMQC SPNQGLLAQN NQSLMNHHGL ISLGDNNNNN HNFFNLAYFQ DTKNSDQTGV PSLFTNGADN NGPSALLRGL TSSSSSSVVV NDFGDCDHGN
401: LQGLMNSLAA TTDQQGRSPS LFDLHFANNL SMGGSDRLTL DFLGVNGGIV STVNGRGGRS GGPPLDAEMK FSHPNHPYGK A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.