Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY09390 | Canola | nucleus | 20.4 | 85.71 |
| CDY04118 | Canola | nucleus | 20.4 | 85.71 |
| CDY53540 | Canola | nucleus | 23.4 | 60.31 |
| CDY04117 | Canola | nucleus | 24.4 | 57.01 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 36.8 | 50.55 |
| GSMUA_Achr3P13990_001 | Banana | nucleus | 42.0 | 49.3 |
| GSMUA_Achr11P... | Banana | nucleus | 52.4 | 46.29 |
| GSMUA_Achr5P11770_001 | Banana | nucleus, plastid | 36.8 | 46.23 |
| GSMUA_Achr9P23870_001 | Banana | nucleus | 40.0 | 46.08 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 30.0 | 46.01 |
| KRG89168 | Soybean | nucleus, plastid | 32.0 | 45.98 |
| GSMUA_Achr1P17940_001 | Banana | nucleus | 42.8 | 45.82 |
| GSMUA_Achr4P11810_001 | Banana | mitochondrion, nucleus | 44.4 | 45.31 |
| GSMUA_Achr7P14780_001 | Banana | nucleus | 32.0 | 44.82 |
| GSMUA_Achr10P... | Banana | nucleus | 42.6 | 44.47 |
| GSMUA_Achr1P07110_001 | Banana | nucleus | 43.2 | 44.44 |
| GSMUA_Achr2P08460_001 | Banana | nucleus | 27.6 | 43.81 |
| GSMUA_Achr2P16690_001 | Banana | nucleus | 32.0 | 43.48 |
| GSMUA_Achr5P22140_001 | Banana | nucleus | 32.8 | 43.04 |
| GSMUA_Achr6P27030_001 | Banana | nucleus | 30.0 | 42.37 |
| GSMUA_Achr4P04310_001 | Banana | nucleus | 39.2 | 41.44 |
| GSMUA_Achr7P13540_001 | Banana | nucleus | 30.2 | 41.37 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 31.4 | 40.78 |
| GSMUA_AchrUn_... | Banana | mitochondrion, nucleus | 39.8 | 40.7 |
| GSMUA_Achr7P09150_001 | Banana | nucleus | 33.0 | 40.24 |
| VIT_01s0010g02100.t01 | Wine grape | nucleus | 45.0 | 39.34 |
| Os09t0555700-02 | Rice | nucleus | 41.8 | 39.07 |
| GSMUA_Achr10P... | Banana | nucleus | 29.0 | 38.46 |
| GSMUA_Achr10P... | Banana | nucleus | 34.4 | 38.31 |
| GSMUA_Achr9P06650_001 | Banana | nucleus | 28.0 | 38.15 |
| GSMUA_Achr11P... | Banana | nucleus | 38.6 | 37.77 |
| GSMUA_Achr7P22720_001 | Banana | mitochondrion | 21.2 | 37.72 |
| KRH49485 | Soybean | nucleus | 40.8 | 37.57 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 40.8 | 37.36 |
| GSMUA_Achr8P10040_001 | Banana | nucleus | 33.4 | 37.36 |
| TraesCS5D01G364900.1 | Wheat | nucleus, plastid | 40.8 | 37.29 |
| CDY45271 | Canola | nucleus | 31.0 | 37.26 |
| TraesCS5A01G356100.1 | Wheat | nucleus, plastid | 40.4 | 37.06 |
| KRG90705 | Soybean | nucleus | 42.0 | 37.04 |
| KRG91985 | Soybean | nucleus | 41.4 | 36.96 |
| KRH36039 | Soybean | nucleus | 42.2 | 36.95 |
| GSMUA_Achr1P02080_001 | Banana | nucleus | 40.4 | 36.93 |
| KRH49489 | Soybean | nucleus, plastid | 39.0 | 36.59 |
| CDY59418 | Canola | nucleus | 30.2 | 36.56 |
| KRG89167 | Soybean | nucleus, plastid | 39.8 | 36.25 |
| CDY17440 | Canola | nucleus | 34.6 | 36.19 |
| PGSC0003DMT400075837 | Potato | nucleus | 37.4 | 36.1 |
| KRH34792 | Soybean | nucleus | 40.0 | 36.04 |
| GSMUA_Achr11P... | Banana | nucleus | 38.0 | 35.65 |
| Bra026204.1-P | Field mustard | nucleus, plastid | 32.0 | 35.56 |
| CDY45270 | Canola | nucleus | 32.0 | 35.56 |
| Solyc04g008500.2.1 | Tomato | nucleus | 36.6 | 35.4 |
| AT2G02080.3 | Thale cress | nucleus, plastid | 36.0 | 34.88 |
| CDY15814 | Canola | nucleus | 33.0 | 34.88 |
| GSMUA_Achr5P06450_001 | Banana | nucleus | 33.2 | 34.87 |
| Bra024833.1-P | Field mustard | plastid | 35.6 | 34.7 |
| CDY17614 | Canola | nucleus, plastid | 35.6 | 34.7 |
| CDX81653 | Canola | nucleus | 32.4 | 34.69 |
| Bra026819.1-P | Field mustard | nucleus | 32.4 | 34.69 |
| Bra026616.1-P | Field mustard | nucleus | 35.4 | 34.64 |
| GSMUA_Achr11P... | Banana | nucleus | 28.6 | 34.54 |
| CDY03080 | Canola | nucleus, plastid | 35.2 | 34.11 |
| GSMUA_Achr7P24170_001 | Banana | nucleus | 34.0 | 33.86 |
| Bra026203.1-P | Field mustard | nucleus, plastid | 31.4 | 33.84 |
| CDY03081 | Canola | nucleus | 35.4 | 33.78 |
| CDY17615 | Canola | nucleus | 35.6 | 33.78 |
| VIT_01s0010g02090.t01 | Wine grape | extracellular, vacuole | 44.4 | 33.59 |
| AT1G14580.3 | Thale cress | nucleus | 32.2 | 33.47 |
| CDY15811 | Canola | nucleus | 37.2 | 32.75 |
| CDY09391 | Canola | nucleus | 37.0 | 32.63 |
| GSMUA_Achr4P14030_001 | Banana | nucleus | 35.2 | 32.41 |
| Bra024834.1-P | Field mustard | nucleus, plastid | 35.6 | 32.25 |
| GSMUA_Achr4P07200_001 | Banana | nucleus | 34.2 | 31.67 |
| Bra026617.1-P | Field mustard | nucleus | 37.0 | 31.36 |
| GSMUA_Achr3P29940_001 | Banana | nucleus | 36.2 | 31.15 |
| Bra040974.1-P | Field mustard | nucleus, plastid | 35.8 | 30.6 |
| GSMUA_Achr7P25960_001 | Banana | nucleus | 35.8 | 30.24 |
| AT2G02070.2 | Thale cress | nucleus | 36.0 | 29.9 |
| Bra023223.1-P | Field mustard | plastid | 28.2 | 29.38 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 22.0 | 29.1 |
| GSMUA_Achr10P... | Banana | nucleus | 21.8 | 28.46 |
| CDY68983 | Canola | nucleus | 22.0 | 28.13 |
| CDY12268 | Canola | nucleus | 24.6 | 27.58 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 20.4 | 27.57 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 20.6 | 27.11 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 19.8 | 25.85 |
| GSMUA_Achr10P... | Banana | nucleus | 20.0 | 25.06 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 21.2 | 25.0 |
| GSMUA_AchrUn_... | Banana | nucleus | 33.6 | 18.9 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P05240_001 | EnsemblPlants:GSMUA_Achr4T05240_001 | EnsemblPlantsGene:GSMUA_Achr4G05240_001 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR013087 | InterPro:Znf_C2H2_jaz | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type |
| PANTHER:PTHR10593 | PANTHER:PTHR10593:SF50 | PFAM:PF12171 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg |
| SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI000295BAB5 | UniProt:M0SL91 | MapMan:15.5.15 | : |
Description
Putative Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G05240_001]
Coordinates
chr4:-:4050930..4053750
Molecular Weight (calculated)
54477.6 Da
IEP (calculated)
9.458
GRAVY (calculated)
-0.452
Length
500 amino acids
Sequence
(BLAST)
(BLAST)
001: MTMASSSVPL FGSIEEEKHV TQQQQPQPGS AVAAAAAAQP AAPPPKKKRN LPRNPSKFIC EVCNKGFQRE QNLQLHRRGH NLPWKLKQKN PKDVRRRVYV
101: CPEPTCAHHD PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RNTQLLQSKP
201: FHGFMQLQHL QTNTESSSPS AAAAATNLSN LGIFSDSSNR SAVTNSSNVA MNQNAHLLVS DPFNTAGGSN GPNAIFAGNI VGNNLLDANM SPMCNNSVSN
301: ESMPPHMSAT ALLQKATQMG ATSSCISASS SLRGVGSLYS SAAKNAGSRT VFDGVESESH FQDLVNSLTN ETSGILSGGN QQETGFSGFG ATDRLTRDFL
401: GVGSMMRRMG GVLTQREEQH LGIDMASLDP ELKTVLYAIL TCNISFLNCL SPSLALLLLD KKPVLFKSTE ANESFPSWVT LFALRLSLYV LRDKQAAKDK
101: CPEPTCAHHD PSRALGDLTG IKKHYCRKHG EKKWKCDKCS KRYAVQSDWK AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAQESA RNTQLLQSKP
201: FHGFMQLQHL QTNTESSSPS AAAAATNLSN LGIFSDSSNR SAVTNSSNVA MNQNAHLLVS DPFNTAGGSN GPNAIFAGNI VGNNLLDANM SPMCNNSVSN
301: ESMPPHMSAT ALLQKATQMG ATSSCISASS SLRGVGSLYS SAAKNAGSRT VFDGVESESH FQDLVNSLTN ETSGILSGGN QQETGFSGFG ATDRLTRDFL
401: GVGSMMRRMG GVLTQREEQH LGIDMASLDP ELKTVLYAIL TCNISFLNCL SPSLALLLLD KKPVLFKSTE ANESFPSWVT LFALRLSLYV LRDKQAAKDK
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.