Factsheet for GSMUA_Achr2P08460_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P13540_001	Banana	nucleus	55.24	47.67
GSMUA_Achr2P16690_001	Banana	nucleus	55.24	47.28
GSMUA_Achr3P25410_001	Banana	nucleus	48.57	46.93
GSMUA_Achr5P22140_001	Banana	nucleus	53.97	44.62
GSMUA_Achr7P14780_001	Banana	nucleus	49.84	43.98
GSMUA_Achr7P09150_001	Banana	nucleus	54.29	41.71
GSMUA_Achr2P08910_001	Banana	nucleus	49.21	40.26
GSMUA_Achr7P22720_001	Banana	mitochondrion	35.87	40.21
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	46.35	40.11
GSMUA_Achr9P06650_001	Banana	nucleus	46.35	39.78
GSMUA_Achr10P...	Banana	nucleus	56.51	39.64
GSMUA_Achr10P...	Banana	nucleus	45.4	37.93
GSMUA_Achr5P06450_001	Banana	nucleus	56.83	37.6
GSMUA_Achr6P27030_001	Banana	nucleus	41.9	37.29
GSMUA_Achr3P13990_001	Banana	nucleus	49.52	36.62
GSMUA_Achr1P17940_001	Banana	nucleus	51.43	34.69
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	43.81	34.67
GSMUA_Achr8P10040_001	Banana	nucleus	48.89	34.45
GSMUA_Achr11P...	Banana	nucleus	44.44	33.82
GSMUA_Achr7P24170_001	Banana	nucleus	52.7	33.07
GSMUA_Achr1P07110_001	Banana	nucleus	50.48	32.72
GSMUA_Achr10P...	Banana	nucleus	47.94	31.52
GSMUA_Achr9P23870_001	Banana	nucleus	43.17	31.34
GSMUA_Achr4P04310_001	Banana	nucleus	46.03	30.66
GSMUA_Achr4P14030_001	Banana	nucleus	52.38	30.39
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	46.98	30.2
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	45.4	29.24
GSMUA_Achr7P18610_001	Banana	nucleus	34.92	29.1
GSMUA_Achr11P...	Banana	nucleus	46.98	28.96
GSMUA_Achr3P29940_001	Banana	nucleus	53.02	28.74
GSMUA_Achr7P25960_001	Banana	nucleus	53.97	28.72
GSMUA_Achr5P23130_001	Banana	nucleus	34.6	28.68
GSMUA_Achr11P...	Banana	nucleus	48.25	28.52
GSMUA_Achr10P...	Banana	nucleus	34.6	28.46
GSMUA_Achr6P02490_001	Banana	nucleus	33.33	28.38
GSMUA_Achr4P07200_001	Banana	nucleus	48.57	28.33
GSMUA_Achr1P02080_001	Banana	nucleus	48.89	28.15
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	33.65	27.68
GSMUA_Achr4P05240_001	Banana	nucleus	43.81	27.6
GSMUA_Achr10P...	Banana	nucleus	33.65	26.57
GSMUA_Achr11P...	Banana	nucleus	46.67	25.97
GSMUA_Achr3P20220_001	Banana	nucleus	34.6	25.71
GSMUA_AchrUn_...	Banana	nucleus	54.29	19.24

Protein Annotations

EnsemblPlants:GSMUA_Achr2P08460_001	EnsemblPlants:GSMUA_Achr2T08460_001	EnsemblPlantsGene:GSMUA_Achr2G08460_001	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	GO:GO:0046872	InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
PANTHER:PTHR10593	PANTHER:PTHR10593:SF49	PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI00029546BB	UniProt:M0S687	MapMan:15.5.15	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr2G08460_001]

Coordinates

chr2:-:12470274..12471773

Molecular Weight (calculated)

35065.6 Da

IEP (calculated)

9.388

GRAVY (calculated)

-0.666

Length

315 amino acids

Sequence
(BLAST)

001: MKVEENMSNP TTSASSQNPV PAKRKRGLPG NPDPDAEVIA LSPNTLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRTNKQVRK KVYICPDASC
101: VHHDPSRALG DLSGIKKHFS RKHGEKKWKC EKCSKKYAVH SDWRAHCKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA EESARVTQAN PVADHHQHFQ
201: MDPLSSIYAT MLESEFQREG QSSLPASYRT STTFPFLSAT ALFQKEAQMG AVTARPRHID QMAAHTSSAT GFSLGWCSGG APLHGVKTHS ALLHEMACPP
301: PPPADIAGFS EGKPQ

Best Arabidopsis Sequence Match ( AT3G45260.2 )
(BLAST)

001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ

Arabidopsis Description

IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.