Factsheet for GSMUA_Achr9P06650_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P22470_001
GSMUA_Achr4P16460_001
GSMUA_Achr5P21440_001
GSMUA_Achr6P08220_001
GSMUA_Achr7P22720_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P09400_001
GSMUA_Achr8P09690_001
GSMUA_Achr8P30950_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	GSMUA_Achr11P...	AT3G54220.1	17785527
AT1G03840.1	GSMUA_Achr5P21440_001	AT3G54220.1	17785527
AT1G03840.1	GSMUA_Achr8P09400_001	AT3G54220.1	17785527
AT1G03840.1	GSMUA_Achr1P22470_001	AT4G37650.1	17785527
AT1G03840.1	GSMUA_Achr4P16460_001	AT4G37650.1	17785527
AT1G03840.1	GSMUA_Achr8P30950_001	AT4G37650.1	17785527
AT1G03840.1	GSMUA_Achr7P22720_001	AT5G03150.1	17785527
AT5G44160.1	GSMUA_Achr11P...	AT1G50420.1	21798944
AT5G44160.1	GSMUA_Achr11P...	AT1G50420.1	21798944
AT5G44160.1	GSMUA_Achr8P09690_001	AT1G50420.1	21798944
AT5G44160.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT5G44160.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY14910	Canola	nucleus	26.16	72.18
CDY72283	Canola	nucleus	34.6	67.2
Bra036013.1-P	Field mustard	nucleus	28.61	66.46
GSMUA_Achr10P...	Banana	nucleus	55.86	54.38
GSMUA_Achr7P14780_001	Banana	nucleus	48.23	49.58
GSMUA_Achr6P27030_001	Banana	nucleus	46.59	48.31
GSMUA_Achr3P25410_001	Banana	nucleus	41.69	46.93
GSMUA_Achr2P08460_001	Banana	nucleus	39.78	46.35
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	44.96	45.33
GSMUA_Achr2P16690_001	Banana	nucleus	44.96	44.84
VIT_12s0028g03030.t01	Wine grape	nucleus	50.68	43.56
GSMUA_Achr5P22140_001	Banana	nucleus	44.14	42.52
GSMUA_Achr7P13540_001	Banana	nucleus	42.23	42.47
GSMUA_Achr2P08910_001	Banana	nucleus	43.87	41.82
KRH49655	Soybean	nucleus	39.78	40.33
GSMUA_Achr7P09150_001	Banana	nucleus	43.87	39.27
KRH55868	Soybean	nucleus	50.41	39.03
KRH22332	Soybean	nucleus	50.14	38.82
Bra015271.1-P	Field mustard	nucleus	50.41	38.38
CDX89862	Canola	nucleus	50.14	38.33
GSMUA_Achr3P13990_001	Banana	nucleus	44.41	38.26
KRH25657	Soybean	nucleus	49.05	38.22
CDY18188	Canola	nucleus	49.86	38.2
Bra033724.1-P	Field mustard	nucleus	47.96	37.93
CDX94759	Canola	nucleus	47.68	37.72
KRH26995	Soybean	nucleus	49.32	37.71
CDY22307	Canola	nucleus	47.41	37.5
Bra032541.1-P	Field mustard	nucleus	49.86	37.35
CDY32514	Canola	nucleus	49.86	37.35
GSMUA_Achr10P...	Banana	nucleus	45.5	37.19
PGSC0003DMT400024272	Potato	nucleus	50.14	37.17
Solyc07g053570.2.1	Tomato	nucleus	50.68	37.05
AT5G44160.1	Thale cress	nucleus	46.87	36.91
GSMUA_Achr7P22720_001	Banana	mitochondrion	27.79	36.3
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	39.24	36.18
AT1G03840.1	Thale cress	nucleus	49.86	36.17
GSMUA_Achr9P23870_001	Banana	nucleus	42.23	35.71
GSMUA_Achr8P10040_001	Banana	nucleus	43.32	35.57
GSMUA_Achr5P06450_001	Banana	nucleus	45.78	35.29
GSMUA_Achr11P...	Banana	nucleus	39.78	35.27
GSMUA_Achr1P17940_001	Banana	nucleus	43.87	34.48
GSMUA_Achr1P07110_001	Banana	nucleus	44.96	33.95
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	45.23	33.95
GSMUA_Achr10P...	Banana	nucleus	44.14	33.82
GSMUA_Achr4P04310_001	Banana	nucleus	42.78	33.19
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	44.14	33.06
GSMUA_Achr11P...	Banana	nucleus	47.14	32.46
GSMUA_Achr7P24170_001	Banana	nucleus	44.14	32.27
GSMUA_Achr11P...	Banana	nucleus	44.69	32.09
GSMUA_Achr4P14030_001	Banana	nucleus	47.41	32.04
GSMUA_Achr3P29940_001	Banana	nucleus	49.05	30.98
GSMUA_Achr7P25960_001	Banana	nucleus	49.32	30.57
GSMUA_Achr4P07200_001	Banana	nucleus	44.69	30.37
GSMUA_Achr1P02080_001	Banana	nucleus	44.96	30.16
GSMUA_Achr7P18610_001	Banana	nucleus	29.43	28.57
GSMUA_Achr11P...	Banana	nucleus	43.87	28.45
GSMUA_Achr5P23130_001	Banana	nucleus	29.43	28.42
GSMUA_Achr6P02490_001	Banana	nucleus	28.61	28.38
GSMUA_Achr4P05240_001	Banana	nucleus	38.15	28.0
GSMUA_Achr10P...	Banana	nucleus	28.34	27.15
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	28.07	26.89
GSMUA_Achr3P20220_001	Banana	nucleus	29.16	25.24
GSMUA_Achr10P...	Banana	nucleus	27.25	25.06
GSMUA_AchrUn_...	Banana	nucleus	43.87	18.11

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	EnsemblPlantsGene:GSMUA_Achr9G06650_001
EnsemblPlants:GSMUA_Achr9P06650_001	EnsemblPlants:GSMUA_Achr9T06650_001	InterPro:IPR013087	UniProt:M0TY24	PFAM:PF00096	ScanProsite:PS00028
PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	SUPFAM:SSF57667	UniParc:UPI000295E09B	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

Zinc finger protein MAGPIE [Source:GMGC_GENE;Acc:GSMUA_Achr9G06650_001]

Coordinates

chr9:+:4259343..4261047

Molecular Weight (calculated)

40863.4 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.535

Length

367 amino acids

Sequence
(BLAST)

001: MAGEAISDPE AEVIALSPKT LLATNRFLCE ICGKGFQRDQ NLQLHRRGHN LPWKLRQRTS KEPRKRVYVC PEKSCVHHHP SRALGDLTGI KKHFCRKHGE
101: KKWKCDKCSK RYAVQSDCKA HSKTCGTREY RCDCGTVFSR RDSFITHRAF CDALAEESAR VAASNMSRLT SICNGNFSFT RDLMRSNIAH DFSGAISNTT
201: MTESEMLSSI YSDELTSVAL PTSSMKETES PHSLLLKVPS RYSTQHQNQH QQMAMAPDVS ATALLQKAAL IGVNASCATP LSSFETKSRE SNFRYLSNSS
301: LLDMNHPSLA TLSGNTMDNS TLPNPLTTVY STRHLMIQKG DERGGETRDF LGVDAPTICA SSWNGWV

Best Arabidopsis Sequence Match ( AT1G03840.2 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP EAEVIALSPK TLMATNRFLC EICGKGFQRD QNLQLHRRGH NLPWKLKQRT
101: SKEVRKRVYV CPEKSCVHHH PTRALGDLTG IKKHFCRKHG EKKWKCEKCA KRYAVQSDWK AHSKTCGTRE YRCDCGTIFS RRDSFITHRA FCDALAEETA
201: RLNAASHLKS FAATAGSNLN YHYLMGTLIP SPSLPQPPSF PFGPPQPQHH HHHQFPITTN NFDHQDVMKP ASTLSLWSGG NINHHQQVTI EDRMAPQPHS
301: PQEDYNWVFG NANNHGELIT TSDSLITHDN NINIVQSKEN ANGATSLSVP SLFSSVDQIT QDANAASVAV ANMSATALLQ KAAQMGATSS TSPTTTITTD
401: QSAYLQSFAS KSNQIVEDGG SDRFFASFGS NSVELMSNNN NGLHEIGNPR NGVTVVSGMG ELQNYPWKRR RVDIGNAGGG GQTRDFLGVG VQTICHSSSI
501: NGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.