Factsheet for Solyc07g053570.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008910.2.1
Solyc02g092370.1.1
Solyc06g075250.2.1
Solyc09g007550.2.1
Solyc09g091280.2.1
Solyc10g074680.1.1
Solyc10g084180.1.1
Solyc12g099900.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G03840.1	Solyc10g074680.1.1	AT3G54220.1	17785527
AT1G03840.1	Solyc02g092370.1.1	AT4G37650.1	17785527
AT1G03840.1	Solyc06g075250.2.1	AT5G03150.1	17785527
AT1G03840.1	Solyc09g007550.2.1	AT5G03150.1	17785527
AT1G03840.1	Solyc10g084180.1.1	AT5G03150.1	17785527
AT5G44160.1	Solyc01g008910.2.1	AT1G50420.1	21798944
AT5G44160.1	Solyc12g099900.1.1	AT1G50420.1	21798944
AT5G44160.1	Solyc09g091280.2.1	AT3G12280.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024272	Potato	nucleus	92.83	94.14
CDY14910	Canola	nucleus	22.51	84.96
Bra036013.1-P	Field mustard	nucleus	24.5	77.85
CDY72283	Canola	nucleus	29.28	77.78
GSMUA_Achr7P14780_001	Banana	nucleus	40.44	56.86
Zm00001d039254_P001	Maize	nucleus	38.84	55.08
CDX94759	Canola	nucleus	50.2	54.31
AT5G44160.1	Thale cress	nucleus	50.4	54.29
Bra033724.1-P	Field mustard	nucleus	50.0	54.09
CDY22307	Canola	nucleus	49.8	53.88
Os01t0242200-01	Rice	nucleus	43.82	53.01
CDY18188	Canola	nucleus	50.4	52.82
AT1G03840.1	Thale cress	nucleus	52.79	52.37
Bra015271.1-P	Field mustard	nucleus	49.8	51.87
CDX89862	Canola	nucleus	49.4	51.67
Bra032541.1-P	Field mustard	nucleus	50.4	51.63
CDY32514	Canola	nucleus	50.4	51.63
GSMUA_Achr9P06650_001	Banana	nucleus	37.05	50.68
GSMUA_Achr10P...	Banana	nucleus	35.86	47.75
GSMUA_Achr6P27030_001	Banana	nucleus	33.47	47.46
VIT_12s0028g03030.t01	Wine grape	nucleus	39.64	46.6
TraesCS3B01G195900.1	Wheat	nucleus	45.42	46.44
EES02157	Sorghum	nucleus	43.82	45.74
TraesCS3D01G171300.1	Wheat	nucleus	44.62	45.62
TraesCS3A01G170700.1	Wheat	nucleus	44.42	45.6
KRH22332	Soybean	nucleus	40.44	42.83
KRH26995	Soybean	nucleus	40.04	41.88
Zm00001d009030_P002	Maize	nucleus	36.45	40.94
Solyc09g007550.2.1	Tomato	nucleus, plastid	36.65	40.09
Solyc08g063040.2.1	Tomato	nucleus	37.05	39.83
Solyc01g099340.2.1	Tomato	nucleus	33.07	39.15
Solyc09g065670.2.1	Tomato	nucleus	35.06	37.45
Solyc11g069240.1.1	Tomato	nucleus	33.07	36.97
Solyc04g080130.2.1	Tomato	nucleus	35.86	35.93
Solyc09g074780.2.1	Tomato	nucleus, plastid	36.85	35.58
Solyc06g062670.2.1	Tomato	nucleus	35.46	35.39
Solyc10g084180.1.1	Tomato	nucleus	34.66	35.29
Solyc03g121660.2.1	Tomato	nucleus	37.85	35.06
Solyc06g075250.2.1	Tomato	nucleus, plastid	36.65	34.85
Solyc04g008500.2.1	Tomato	nucleus	35.06	34.04
Solyc01g005060.2.1	Tomato	nucleus	21.71	32.15
Solyc06g072360.2.1	Tomato	nucleus	22.31	28.57
Solyc05g054030.2.1	Tomato	nucleus	21.31	28.08
Solyc02g062940.2.1	Tomato	nucleus	35.86	27.44
Os07t0581366-00	Rice	cytosol, nucleus	31.47	24.92
Solyc03g098070.2.1	Tomato	nucleus	17.33	23.9
Zm00001d006682_P001	Maize	nucleus	34.06	23.05
EER97442	Sorghum	nucleus	34.06	21.81
TraesCS2B01G218900.1	Wheat	nucleus	34.26	21.45
Zm00001d021932_P001	Maize	nucleus	34.06	20.98
TraesCS2A01G188400.2	Wheat	nucleus	34.26	20.72
TraesCS2D01G199300.3	Wheat	nucleus	34.06	20.24
HORVU2Hr1G036710.3	Barley	nucleus	29.28	16.94

Protein Annotations

EnsemblPlants:Solyc07g053570.2.1	EnsemblPlantsGene:Solyc07g053570.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF26	PFscan:PS50157
ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000276C009	UniProt:K4CFQ2
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr7:-:61984355..61986928

Molecular Weight (calculated)

55283.8 Da

IEP (calculated)

8.985

GRAVY (calculated)

-0.651

Length

502 amino acids

Sequence
(BLAST)

001: MTEEVISNGF THDNSIEGSN PPPLKKKRNL PGNPDPEAEV IALSPKTLMA TNRFLCEICG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK
101: VCVHHHPSRA LGDLTGIKKH YCRKHGEKKW KCDKCSKRYA VQSDWKAHSK TCGTREYRCD CGTIFSRRDS FVTHRAFCDA LAEETARVTA ASNMHNPLAM
201: ANNINYHFIG APLGPNMAQH FSSLFKPVSN NNNNNNNNEN SDPMRRNQLS LWNNIGVAQE QDQIGININN LREIHQINPL LHHTSAPAPA PVYDANTLLA
301: SSRSNAPPVS YNNNNHINWD QFIGSKTSPI NNAEQLSNTS SANISVPSLF SCQQQIALSS PSANMSATAL LQKAAQIGAT TTTDPSIFLG NFSMNNCSNN
401: NNNKNNDNNK FCGFYVSTPT TNNSISNSLG SDVDQSSSVN DFSATIHPIQ MYPPPKRRHI QIEDSVKGVE VGAGGGAGGQ TRDFLGVGVQ SICHPSSING
501: LI

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.