Factsheet for Solyc08g063040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021189	Potato	nucleus	92.93	92.73
KRH15560	Soybean	nucleus	40.47	46.32
VIT_04s0008g01160.t01	Wine grape	nucleus	49.68	44.11
KRH05443	Soybean	nucleus	40.9	43.41
Solyc03g121660.2.1	Tomato	nucleus	48.61	41.88
Solyc06g062670.2.1	Tomato	nucleus	44.33	41.15
Solyc11g069240.1.1	Tomato	nucleus	38.97	40.53
Solyc09g007550.2.1	Tomato	nucleus, plastid	39.4	40.09
Solyc01g099340.2.1	Tomato	nucleus	35.55	39.15
Solyc09g065670.2.1	Tomato	nucleus	38.76	38.51
Solyc10g084180.1.1	Tomato	nucleus	39.61	37.53
Solyc07g053570.2.1	Tomato	nucleus	39.83	37.05
Solyc04g080130.2.1	Tomato	nucleus	39.61	36.93
Solyc06g075250.2.1	Tomato	nucleus, plastid	39.61	35.04
Solyc09g074780.2.1	Tomato	nucleus, plastid	38.76	34.81
Solyc04g008500.2.1	Tomato	nucleus	37.47	33.85
Solyc01g005060.2.1	Tomato	nucleus	23.77	32.74
Solyc06g072360.2.1	Tomato	nucleus	24.41	29.08
Solyc05g054030.2.1	Tomato	nucleus	23.55	28.87
Solyc02g062940.2.1	Tomato	nucleus	37.26	26.52
Solyc03g098070.2.1	Tomato	nucleus	18.42	23.63

Protein Annotations

EnsemblPlants:Solyc08g063040.2.1	EnsemblPlantsGene:Solyc08g063040.2	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF25	PFAM:PF00096
PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI000276B4C8
UniProt:K4CL86	MapMan:15.5.15	:	:	:	:

Description

No Description!

Coordinates

chr8:+:52578024..52581053

Molecular Weight (calculated)

51817.6 Da

IEP (calculated)

9.197

GRAVY (calculated)

-0.774

Length

467 amino acids

Sequence
(BLAST)

001: MIKGMLGDDS MSNLTSASNE ASISSTNNRI EIGSHVLYPQ LQNIQTQPPP NKKKRNLPGN PDPEAEVVAL SPRSLLATNR FVCEICNKGF QRDQNLQLHR
101: RGHNLPWKLK QRSNKEVKKK VYVCPEASCV HHHPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKICG TREYRCDCGT LFSRRDSFIT
201: HRAFCDALTE ESSRTIIPPP NSSTSHHLNL HTLQNFQMKQ EQQQQNNDLS SQLFIQNPNG NSSNMFGAPP PHMSATALLQ KAAQIGVTSS SHTANNMSAT
301: TFFSPTTSTT TGIAMSGSGS GAGVARQYHP FENNNNNNNT NTDFVTGNTS FPDFGASVTP GFMEQVHDMQ NMMATTAPSL PCTSFDEGFG RGAHLMRQGK
401: ENNEGLTRDF LGLRAFPHHR DFLSTTTPPA ALHYNMGSSA AAAAPASFDQ HHHHHQNQNQ NQLPWQN

Best Arabidopsis Sequence Match ( AT1G55110.2 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.