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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid, nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
  • cytosol 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400008694 Potato nucleus, plastid 95.64 95.64
Solyc11g069240.1.1 Tomato nucleus 56.82 66.82
Solyc10g084180.1.1 Tomato nucleus 48.48 51.93
Solyc09g007550.2.1 Tomato nucleus, plastid 38.45 44.23
VIT_08s0040g02100.t01 Wine grape nucleus 39.77 42.68
Solyc01g099340.2.1 Tomato nucleus 34.09 42.45
GSMUA_Achr7P22720_001 Banana mitochondrion 22.35 41.99
KRH19850 Soybean nucleus 40.15 40.38
KRH32442 Soybean nucleus 40.15 39.85
Solyc08g063040.2.1 Tomato nucleus 35.04 39.61
KRG95964 Soybean nucleus 38.26 39.61
CDY44344 Canola nucleus 37.31 39.4
AT5G03150.1 Thale cress nucleus 37.5 39.36
KRH67672 Soybean nucleus 38.26 39.3
CDY11241 Canola nucleus 37.12 38.97
CDY10404 Canola nucleus 37.31 38.86
Bra005741.1-P Field mustard nucleus 36.93 38.69
CDX80854 Canola nucleus 36.93 38.61
Bra009549.1-P Field mustard nucleus 37.31 38.18
CDX70328 Canola nucleus 37.12 38.13
Solyc04g080130.2.1 Tomato nucleus 35.42 37.33
Solyc09g065670.2.1 Tomato nucleus 33.14 37.23
Solyc06g062670.2.1 Tomato nucleus 35.23 36.98
Solyc07g053570.2.1 Tomato nucleus 34.85 36.65
Solyc04g008500.2.1 Tomato nucleus 35.61 36.36
Solyc09g074780.2.1 Tomato nucleus, plastid 35.04 35.58
Solyc03g121660.2.1 Tomato nucleus 36.17 35.24
Solyc01g005060.2.1 Tomato nucleus 21.4 33.33
Solyc06g072360.2.1 Tomato nucleus 23.48 31.63
Solyc05g054030.2.1 Tomato nucleus 20.64 28.61
Solyc02g062940.2.1 Tomato nucleus 33.71 27.13
Solyc03g098070.2.1 Tomato nucleus 17.42 25.27
Protein Annotations
EnsemblPlants:Solyc06g075250.2.1EnsemblPlantsGene:Solyc06g075250.2Gene3D:3.30.160.60GO:GO:0003674GO:GO:0003676GO:GO:0005488
GO:GO:0046872InterPro:IPR013087InterPro:JKD-likeInterPro:Znf_C2H2_jazInterPro:Znf_C2H2_sfInterPro:Znf_C2H2_type
PANTHER:PTHR10593PANTHER:PTHR10593:SF42PFAM:PF12171PFscan:PS50157ScanProsite:PS00028SEG:seg
SMART:SM00355SUPFAM:SSF57667UniParc:UPI0002766993UniProt:K4C9P0MapMan:15.5.15:
Description
No Description!
Coordinates
chr6:-:46691975..46694476
Molecular Weight (calculated)
58188.1 Da
IEP (calculated)
9.252
GRAVY (calculated)
-0.793
Length
528 amino acids
Sequence
(BLAST)
001: MMSDDGLSSL AFIQDPNSNP TNNNPNPNSN PSAKRKRNLP GKPDPDAEVI ALSPKSLMAT NRFICEICNK GFQRDQNLQL HRRGHNLPWK LKQRNKNEVI
101: KKKVYICPEK TCIHHDPSRA LGDLTGIKKH FSRKHGEKKW KCEKCSKKYA VQSDWKAHTK ICGTREYKCD CGTLFSRKDS FITHRAFCDA LAEESARFTS
201: VPSTANLNFR NEILLNGGFG NTNLQQSTGN PQFGSNLFRP EFMGLGLDPA ISHHHQPQLN NVDGQKPRIP LWLDNNMNPN PGNDFLVASS SSTTSNLPHH
301: ELVQIAAHNN TQQWFINGTG VGDDSGIGSS SSQLPSRVLL KEEEENKRNM SETISSMYYN NHHNETTAPA THMSATALLQ KAAQMGSTRS NSALFGTGFG
401: LMGSSFSKSN GQGQFATHDQ NFNGLMMHSP NNNNSNQGNR LLFGDMNSTS LEGNASGKNS DPFNLMPRNN KGKQVNLSGN EAMEGGLTRD FLGVGGNESR
501: PFLSKNELAK FGNISASAMG LSDYSETH
Best Arabidopsis Sequence Match ( AT3G45260.2 )
(BLAST)
001: MMMPDDHHPL SFPSYVLHQE HIAPNPNPNP NPTSSNSAKR KRNLPGNPDP DAEVIALSPN SLMTTNRFIC EVCNKGFKRD QNLQLHRRGH NLPWKLKQRT
101: NKEQVKKKVY ICPEKTCVHH DPARALGDLT GIKKHFSRKH GEKKWKCDKC SKKYAVMSDW KAHSKICGTK EYRCDCGTLF SRKDSFITHR AFCDALAEES
201: ARFVSVPPAP AYLNNALDVE VNHGNINQNH QQRQLNTTSS QLDQPGFNTN RNNIAFLGQT LPTNVFASSS SPSPRSASDS LQNLWHLQGQ SSHQWLLNEN
301: NNNNNNILQR GISKNQEEHE MKNVISNGSL FSSEARNNTN NYNQNGGQIA SMSATALLQK AAQMGSKRSS SSSSNSKTFG LMTSIFNNKQ AENIKTKEVD
401: ERGFTRDFLG VGSQHRSWPL LMVNHNLPDS SPPASTDGTP TADMNQ
Arabidopsis Description
IDD9Protein indeterminate-domain 9 [Source:UniProtKB/Swiss-Prot;Acc:Q944L3]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.