Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX96046 | Canola | nucleus | 35.7 | 58.37 |
| Solyc01g005060.2.1 | Tomato | nucleus | 44.36 | 49.85 |
| GSMUA_Achr7P18610_001 | Banana | nucleus | 44.88 | 45.24 |
| Solyc06g072360.2.1 | Tomato | nucleus | 45.14 | 43.88 |
| CDY36123 | Canola | nucleus | 43.31 | 43.65 |
| Bra010981.1-P | Field mustard | nucleus | 43.31 | 43.65 |
| CDY51986 | Canola | nucleus | 43.31 | 43.65 |
| CDY60366 | Canola | nucleus | 43.04 | 42.82 |
| CDX84974 | Canola | nucleus | 43.04 | 42.82 |
| Bra026624.1-P | Field mustard | nucleus | 49.08 | 42.69 |
| Bra024771.1-P | Field mustard | nucleus | 42.78 | 42.56 |
| GSMUA_Achr6P02490_001 | Banana | nucleus | 41.21 | 42.43 |
| GSMUA_Achr5P23130_001 | Banana | nucleus | 42.26 | 42.37 |
| CDY04203 | Canola | plastid | 42.52 | 42.08 |
| CDY04204 | Canola | nucleus | 39.63 | 42.06 |
| CDY09400 | Canola | nucleus | 48.29 | 42.01 |
| AT1G25250.3 | Thale cress | nucleus | 42.26 | 41.82 |
| Bra017432.1-P | Field mustard | nucleus | 48.29 | 41.82 |
| GSMUA_Achr10P... | Banana | nucleus | 41.73 | 41.51 |
| AT2G01940.3 | Thale cress | nucleus | 48.29 | 41.26 |
| CDY17620 | Canola | nucleus | 48.03 | 41.22 |
| Bra024841.1-P | Field mustard | nucleus | 48.03 | 41.22 |
| Bra004283.1-P | Field mustard | nucleus | 44.36 | 41.02 |
| CDY04102 | Canola | nucleus | 48.29 | 40.98 |
| CDY15800 | Canola | nucleus | 47.51 | 40.95 |
| CDY07400 | Canola | nucleus | 44.36 | 40.92 |
| Bra004050.1-P | Field mustard | nucleus | 44.36 | 40.92 |
| CDY63960 | Canola | nucleus | 48.03 | 40.58 |
| CDY60095 | Canola | nucleus | 46.72 | 40.27 |
| AT1G68130.1 | Thale cress | nucleus | 44.09 | 40.1 |
| Solyc03g098070.2.1 | Tomato | nucleus | 37.8 | 39.56 |
| GSMUA_Achr2P21680_001 | Banana | nucleus, plastid | 39.63 | 39.43 |
| GSMUA_Achr10P... | Banana | nucleus | 40.68 | 38.85 |
| GSMUA_Achr3P20220_001 | Banana | nucleus | 43.04 | 38.68 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 40.42 | 38.02 |
| TraesCS4D01G232000.1 | Wheat | nucleus, plastid | 40.42 | 37.2 |
| TraesCS4A01G074700.1 | Wheat | nucleus, plastid | 40.42 | 37.11 |
| HORVU4Hr1G064740.2 | Barley | nucleus, plastid | 40.94 | 36.71 |
| Zm00001d005871_P002 | Maize | nucleus | 41.99 | 36.28 |
| Os03t0237250-01 | Rice | plastid | 40.94 | 35.62 |
| Zm00001d047976_P001 | Maize | nucleus, plastid | 41.21 | 35.04 |
| KXG39813 | Sorghum | nucleus, plastid | 41.47 | 34.42 |
| Zm00001d028361_P001 | Maize | nucleus, plastid | 40.68 | 34.29 |
| TraesCS5A01G233700.1 | Wheat | nucleus | 44.09 | 34.22 |
| TraesCS5D01G240600.1 | Wheat | nucleus | 44.09 | 34.22 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 44.09 | 34.15 |
| EER96827 | Sorghum | nucleus | 42.78 | 32.67 |
| Zm00001d020683_P001 | Maize | nucleus | 42.26 | 32.39 |
| Os08t0467100-01 | Rice | nucleus | 44.36 | 31.71 |
| Zm00001d031759_P001 | Maize | nucleus | 42.78 | 31.47 |
| EES13982 | Sorghum | nucleus | 42.78 | 30.41 |
| Solyc08g063040.2.1 | Tomato | nucleus | 28.87 | 23.55 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 28.08 | 23.31 |
| Solyc01g099340.2.1 | Tomato | nucleus | 25.72 | 23.11 |
| Solyc06g062670.2.1 | Tomato | nucleus | 30.45 | 23.06 |
| Solyc04g080130.2.1 | Tomato | nucleus | 30.18 | 22.95 |
| Solyc10g084180.1.1 | Tomato | nucleus | 29.13 | 22.52 |
| Solyc09g065670.2.1 | Tomato | nucleus | 27.56 | 22.34 |
| Solyc11g069240.1.1 | Tomato | nucleus | 25.98 | 22.05 |
| Solyc03g121660.2.1 | Tomato | nucleus | 30.97 | 21.77 |
| Solyc07g053570.2.1 | Tomato | nucleus | 28.08 | 21.31 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 28.61 | 20.96 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 28.61 | 20.64 |
| Solyc04g008500.2.1 | Tomato | nucleus | 27.56 | 20.31 |
| Solyc02g062940.2.1 | Tomato | nucleus | 29.4 | 17.07 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | UniProt:K4C282 | PFAM:PF13912 | ScanProsite:PS00028 | PFscan:PS50157 | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF43 | SMART:SM00355 | SUPFAM:SSF57667 | EnsemblPlantsGene:Solyc05g054030.2 | EnsemblPlants:Solyc05g054030.2.1 | UniParc:UPI00027668EE |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5:+:64011108..64014234
Molecular Weight (calculated)
43994.3 Da
IEP (calculated)
8.522
GRAVY (calculated)
-0.732
Length
381 amino acids
Sequence
(BLAST)
(BLAST)
001: MLTSNSFLFG APSNYSDPFS SPENGFIIKR KRRPAGTPDP DAQVVYLTAE MLMESDRYVC EICNLSFQRE QNLQMHRRRH KVPWKLKKKE EEKNEMDQVI
101: KKRVYVCPEP SCVHHDPCHA LGDLVGIKKH FRRKRSNYKQ WICQKCNKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE TFIEHQDSCK PQSTTTKECH
201: DMQIPKPIFL PTTTTHIPPH DQYSKILPNL DLELFTSPNY FNQNTHNFSS FVDQSDHHHH NNNYIVQNND IEVKEIIEEA TTQVTRLKSE ANEILKIAME
301: EKAMAIEKRQ EAKCLIELAN LEMAKAMEIR QSVCASSSSS SHVMKIIKCS SCNNKQFQSV SSSKDATLTN NYYLSSSIYR R
101: KKRVYVCPEP SCVHHDPCHA LGDLVGIKKH FRRKRSNYKQ WICQKCNKGY AVQSDYKAHI KTCGTRGHSC DCGRVFSRVE TFIEHQDSCK PQSTTTKECH
201: DMQIPKPIFL PTTTTHIPPH DQYSKILPNL DLELFTSPNY FNQNTHNFSS FVDQSDHHHH NNNYIVQNND IEVKEIIEEA TTQVTRLKSE ANEILKIAME
301: EKAMAIEKRQ EAKCLIELAN LEMAKAMEIR QSVCASSSSS SHVMKIIKCS SCNNKQFQSV SSSKDATLTN NYYLSSSIYR R
001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF
Arabidopsis Description
SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.