Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400020945 | Potato | nucleus | 91.54 | 82.04 |
| Solyc06g075250.2.1 | Tomato | nucleus, plastid | 66.82 | 56.82 |
| VIT_06s0004g03070.t01 | Wine grape | nucleus | 57.68 | 51.9 |
| Solyc10g084180.1.1 | Tomato | nucleus | 51.0 | 46.45 |
| Solyc09g007550.2.1 | Tomato | nucleus, plastid | 41.43 | 40.52 |
| Solyc08g063040.2.1 | Tomato | nucleus | 40.53 | 38.97 |
| Solyc01g099340.2.1 | Tomato | nucleus | 36.53 | 38.68 |
| KRH24905 | Soybean | nucleus | 42.76 | 35.49 |
| Solyc04g080130.2.1 | Tomato | nucleus | 38.31 | 34.33 |
| Solyc04g008500.2.1 | Tomato | nucleus | 39.2 | 34.04 |
| KRG89014 | Soybean | nucleus | 42.98 | 33.62 |
| Solyc09g065670.2.1 | Tomato | nucleus | 35.19 | 33.62 |
| Solyc06g062670.2.1 | Tomato | nucleus | 37.64 | 33.6 |
| Solyc07g053570.2.1 | Tomato | nucleus | 36.97 | 33.07 |
| Solyc03g121660.2.1 | Tomato | nucleus | 39.87 | 33.03 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 37.42 | 32.31 |
| Solyc01g005060.2.1 | Tomato | nucleus | 22.94 | 30.38 |
| Solyc06g072360.2.1 | Tomato | nucleus | 24.05 | 27.55 |
| Solyc05g054030.2.1 | Tomato | nucleus | 22.05 | 25.98 |
| Solyc02g062940.2.1 | Tomato | nucleus | 37.42 | 25.61 |
| Solyc03g098070.2.1 | Tomato | nucleus | 19.38 | 23.9 |
Protein Annotations
| EnsemblPlants:Solyc11g069240.1.1 | EnsemblPlantsGene:Solyc11g069240.1 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:JKD-like | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | ncoils:Coil | PANTHER:PTHR10593 |
| PANTHER:PTHR10593:SF42 | PFAM:PF00096 | PFscan:PS50157 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI000276A931 | UniProt:K4DA80 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr11:+:53873154..53878403
Molecular Weight (calculated)
50090.2 Da
IEP (calculated)
9.634
GRAVY (calculated)
-0.720
Length
449 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSNDGLSCS MRDPNAEVIA LSPKSLMATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL KQRNNKEVIK KKVYICPEKS CVHHDPSRAL GDLTGVKKHY
101: SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESTRFTSI QTAVNLNNLR NQLINGGIST NLQQQQQMSG
201: NISQLMGLGS LDPSNQLNLD HGQKSRLPLW LHHENSNYGN PNDFLSTPST TTSTLPHELV QVAPHANMLG SSSLHKNNNN NNNNQWFVND DGGDAIITTS
301: SSMLMPRVLK EEEENKTLSP MYYNNSHMSA TALLQIAAQI GSTRSNNNSP LFSNQFGLMT SSSLSMKNSS SSSSASNVAI HENVQGNNGL LIGATNSTTF
401: VANNANTLMM MQDKGKQGNL TRDFLGGGRN EKRLFLQQTH EMAKFENNK
101: SRKHGEKKWK CEKCSKKYAV QSDWKAHSKI CGTREYKCDC GTLFSRKDSF ITHRAFCDAL AEESTRFTSI QTAVNLNNLR NQLINGGIST NLQQQQQMSG
201: NISQLMGLGS LDPSNQLNLD HGQKSRLPLW LHHENSNYGN PNDFLSTPST TTSTLPHELV QVAPHANMLG SSSLHKNNNN NNNNQWFVND DGGDAIITTS
301: SSMLMPRVLK EEEENKTLSP MYYNNSHMSA TALLQIAAQI GSTRSNNNSP LFSNQFGLMT SSSLSMKNSS SSSSASNVAI HENVQGNNGL LIGATNSTTF
401: VANNANTLMM MQDKGKQGNL TRDFLGGGRN EKRLFLQQTH EMAKFENNK
001: MQMIPGDPFS ISSSMGGFVH QETHLHHLQQ QIPDLNPNSN PNPNAKPNSS SAKKKRNQPG TPDPDADVIA LSPTTLMATN RFVCEICNKG FQRDQNLQLH
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
101: RRGHNLPWKL KQRSKQEVIK KKVYICPIKT CVHHDASRAL GDLTGIKKHY SRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTREYKCDC GTLFSRKDSF
201: ITHRAFCDAL TEEGARMSSL SNNNPVISTT NLNFGNESNV MNNPNLPHGF VHRGVHHPDI NAAISQFGLG FGHDLSAMHA QGLSEMVQMA STGNHHLFPS
301: SSSSLPDFSG HHQFQIPMTS TNPSLTLSSS STSQQTSASL QHQTLKDSSF SPLFSSSSEN KQNKPLSPMS ATALLQKAAQ MGSTRSNSST APSFFAGPTM
401: TSSSATASPP PRSSSPMMIQ QQLNNFNTNV LRENHNRAPP PLSGVSTSSV DNNPFQSNRS GLNPAQQMGL TRDFLGVSNE HHPHQTGRRP FLPQELARFA
501: PLG
Arabidopsis Description
JKDZinc finger protein JACKDAW [Source:UniProtKB/Swiss-Prot;Acc:Q700D2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.