Factsheet for HORVU4Hr1G064740.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
mitochondrion 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	mitochondrion, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G074700.1	Wheat	nucleus, plastid	92.94	95.18
TraesCS4D01G232000.1	Wheat	nucleus, plastid	92.71	95.17
TraesCS4B01G230800.1	Wheat	nucleus, plastid	89.88	94.32
Os03t0237250-01	Rice	plastid	76.47	74.2
Zm00001d028361_P001	Maize	nucleus, plastid	75.76	71.24
Zm00001d047976_P001	Maize	nucleus, plastid	74.82	70.98
KXG39813	Sorghum	nucleus, plastid	76.0	70.37
CDX96046	Canola	nucleus	31.76	57.94
Solyc01g005060.2.1	Tomato	nucleus	41.88	52.51
KRH60588	Soybean	nucleus	45.41	48.25
KRH41885	Soybean	nucleus	43.06	48.16
Solyc06g072360.2.1	Tomato	nucleus	43.76	47.45
CDX84974	Canola	nucleus	41.41	45.95
Bra010981.1-P	Field mustard	nucleus	40.71	45.77
CDY36123	Canola	nucleus	40.71	45.77
CDY51986	Canola	nucleus	40.47	45.5
AT1G25250.3	Thale cress	nucleus	41.18	45.45
CDY60366	Canola	nucleus	40.94	45.43
VIT_01s0011g06400.t01	Wine grape	nucleus	45.41	45.41
Bra024771.1-P	Field mustard	nucleus	40.71	45.17
CDY04204	Canola	nucleus	38.12	45.13
PGSC0003DMT400069306	Potato	nucleus	43.53	45.01
PGSC0003DMT400079735	Potato	nucleus, plastid	45.65	44.39
CDY04203	Canola	plastid	39.29	43.38
KRH58582	Soybean	nucleus	44.47	42.95
CDY07400	Canola	nucleus	41.65	42.86
Bra004050.1-P	Field mustard	nucleus	41.65	42.86
KRH38986	Soybean	nucleus	47.76	42.83
Bra004283.1-P	Field mustard	nucleus	41.41	42.72
AT1G68130.1	Thale cress	nucleus	41.88	42.48
Bra026624.1-P	Field mustard	nucleus	43.76	42.47
VIT_17s0000g01870.t01	Wine grape	nucleus	45.41	42.42
CDY09400	Canola	nucleus	43.29	42.01
KRH48724	Soybean	nucleus	47.53	41.82
Bra024841.1-P	Field mustard	nucleus	43.29	41.44
CDY17620	Canola	nucleus	43.29	41.44
CDY15800	Canola	nucleus	43.06	41.4
Solyc03g098070.2.1	Tomato	nucleus	35.29	41.21
Bra017432.1-P	Field mustard	nucleus	42.59	41.14
Solyc05g054030.2.1	Tomato	nucleus	36.71	40.94
KRH42485	Soybean	nucleus	43.53	40.93
CDY63960	Canola	nucleus	43.29	40.8
CDY60095	Canola	nucleus	42.35	40.72
CDY04102	Canola	nucleus	42.82	40.53
AT2G01940.3	Thale cress	nucleus	42.35	40.36
HORVU3Hr1G049810.3	Barley	nucleus	27.53	25.38
HORVU4Hr1G070950.8	Barley	nucleus	28.47	22.57
HORVU2Hr1G036710.3	Barley	nucleus	23.29	11.41

Protein Annotations

EnsemblPlants:HORVU4Hr1G064740.2	EnsemblPlantsGene:HORVU4Hr1G064740	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593	PANTHER:PTHR10593:SF30
PFAM:PF00096	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
UniParc:UPI000B471405	UniProt:A0A287PDA8	MapMan:15.5.15	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:541606010..541610416

Molecular Weight (calculated)

45124.8 Da

IEP (calculated)

9.976

GRAVY (calculated)

-0.545

Length

425 amino acids

Sequence
(BLAST)

001: MALVKSHHQM LASSSTSSSS PSSQQLQQLQ QTQPPPPPPL APPPPATDQP SPAKRKRRPP GTPDPDAEVV ALTPRTLLES DRYVCEICGQ GFQREQNLQM
101: HRRRHKVPWR LVKRAPAPSA GEDGGTGTAG AAGATTVPRK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV CARCAKGYAV QSDYKAHLKT
201: CGTRGHSCDC GRVFSRVESF IEHQDACNSG RMRGDAGAVP SVLPVLRPAV PRHPPTGVPS TPPPELQLLP VATKAPLNAA PTVFSASHEP HATTKLELSI
301: GPLASSDGVS GAAAADEGRE ELMRAMQEKA AADGERARAR EEAAAAERAL EEARRARQRA RGELEKACAL RDHAARLLAQ VTCHACRQRS FGMVHMGVAA
401: GGGDGGHGGS AVACEALRRG GGLGL

Best Arabidopsis Sequence Match ( AT2G01940.1 )
(BLAST)

001: MRTDQVMLSN KNTNTCCVVS SSSSDPFLSS SENGVTTTNT STQKRKRRPA GTPDPDAEVV SLSPRTLLES DRYICEICNQ GFQRDQNLQM HRRRHKVPWK
101: LLKRDNNIEV KKRVYVCPEP TCLHHNPCHA LGDLVGIKKH FRRKHSNHKQ WVCERCSKGY AVQSDYKAHL KTCGTRGHSC DCGRVFSRVE SFIEHQDNCS
201: ARRVHREPPR PPQTAVTVPA CSSRTASTVS TPSSETNYGG TVAVTTPQPL EGRPIHQRIS SSILTNSSNN LNLELQLLPL SSNQNPNQEN QQQKVKEPSH
301: HHNHNHDTTN LNLSIAPSSS YQHYNNFDRI KEIMASEQIM KIAMKEKAYA EEAKREAKRQ REIAENEFAN AKKIRQKAQA ELERAKFLKE QSMKKISSTI
401: MQVTCQTCKG QFQAVAVPAA TADETSLVVS YMSSANTDGE LENGF

Arabidopsis Description

SGR5C2H2-like zinc finger protein [Source:TAIR;Acc:AT2G01940]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.