Factsheet for Os03t0237250-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G232000.1	Wheat	nucleus, plastid	73.74	78.02
TraesCS4A01G074700.1	Wheat	nucleus, plastid	73.06	77.11
TraesCS4B01G230800.1	Wheat	nucleus, plastid	71.0	76.79
HORVU4Hr1G064740.2	Barley	nucleus, plastid	74.2	76.47
Zm00001d028361_P001	Maize	nucleus, plastid	76.48	74.11
Zm00001d047976_P001	Maize	nucleus, plastid	73.52	71.88
KXG39813	Sorghum	nucleus, plastid	74.43	71.02
CDX96046	Canola	nucleus	31.51	59.23
Solyc01g005060.2.1	Tomato	nucleus	40.87	52.8
KRH41885	Soybean	nucleus	42.69	49.21
KRH60588	Soybean	nucleus	44.29	48.5
Solyc06g072360.2.1	Tomato	nucleus	42.92	47.96
VIT_01s0011g06400.t01	Wine grape	nucleus	46.12	47.53
CDX84974	Canola	nucleus	41.55	47.52
CDY60366	Canola	nucleus	41.32	47.26
Bra024771.1-P	Field mustard	nucleus	41.32	47.26
AT1G25250.3	Thale cress	nucleus	41.32	47.01
CDY04204	Canola	nucleus	38.36	46.8
CDY36123	Canola	nucleus	40.18	46.56
CDY51986	Canola	nucleus	40.18	46.56
Bra010981.1-P	Field mustard	nucleus	40.18	46.56
PGSC0003DMT400069306	Potato	nucleus	42.47	45.26
CDY04203	Canola	plastid	39.27	44.68
PGSC0003DMT400079735	Potato	nucleus, plastid	44.52	44.62
VIT_17s0000g01870.t01	Wine grape	nucleus	46.12	44.4
CDY07400	Canola	nucleus	41.78	44.31
Bra004050.1-P	Field mustard	nucleus	41.78	44.31
Bra004283.1-P	Field mustard	nucleus	41.32	43.93
AT1G68130.1	Thale cress	nucleus	42.01	43.91
Bra026624.1-P	Field mustard	nucleus	43.84	43.84
CDY09400	Canola	nucleus	43.38	43.38
KRH58582	Soybean	nucleus	43.15	42.95
KRH38986	Soybean	nucleus	46.35	42.83
CDY15800	Canola	nucleus	42.92	42.53
Bra024841.1-P	Field mustard	nucleus	42.92	42.34
CDY17620	Canola	nucleus	42.92	42.34
Bra017432.1-P	Field mustard	nucleus	42.47	42.27
AT2G01940.3	Thale cress	nucleus	42.92	42.15
KRH48724	Soybean	nucleus	46.35	42.03
CDY63960	Canola	nucleus	43.15	41.91
CDY04102	Canola	nucleus	42.69	41.65
CDY60095	Canola	nucleus	42.01	41.63
KRH42485	Soybean	nucleus	42.69	41.37
Solyc05g054030.2.1	Tomato	nucleus	35.62	40.94
Solyc03g098070.2.1	Tomato	nucleus	34.02	40.93
Os08t0467100-01	Rice	nucleus	47.95	39.4
Os01t0242200-01	Rice	nucleus	27.4	28.92
Os01t0195000-01	Rice	nucleus	28.54	25.67
Os01t0935000-01	Rice	nucleus	27.17	25.0
Os10t0419200-01	Rice	nucleus	26.94	24.84
Os03t0197800-00	Rice	nucleus	30.59	24.28
Os02t0518500-00	Rice	nucleus	24.89	22.15
Os09t0555700-02	Rice	nucleus	26.71	21.87
Os01t0572300-01	Rice	nucleus	26.71	21.79
Os08t0554400-02	Rice	nucleus	26.94	21.53
Os04t0566400-02	Rice	nucleus	27.4	19.58
Os02t0672100-01	Rice	nucleus	27.17	19.35
Os07t0581366-00	Rice	cytosol, nucleus	27.63	19.09

Protein Annotations

EnsemblPlants:Os03t0237250-01	EnsemblPlantsGene:Os03g0237250	EntrezGene:9270511	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR10593
PANTHER:PTHR10593:SF30	PFscan:PS50157	ProteinID:BAS83159.1	RefSeq:XP_015629419.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0001C7EF56	UniProt:A0A0P0VV73	MapMan:15.5.15	:

Description

indeterminate domain 14, Loose Plant Architecture1Indeterminate domain protein, Shoot gravitropism (Os03t0237250-01)

Coordinates

chr3:-:7237162..7241445

Molecular Weight (calculated)

45962.3 Da

IEP (calculated)

10.124

GRAVY (calculated)

-0.509

Length

438 amino acids

Sequence
(BLAST)

001: MALVKSHHQM LASSSTSSSS PSSQQQQPPP PASNSSSLAA AAADQPSPAK RKRRPPGTPD PDAEVVALSP RTLLESDRYV CEICGQGFQR EQNLQMHRRR
101: HKVPWRLVKR PAAATAAEDG GAAGGGGGAG GGAGGGGARK RVFVCPEPSC LHHDPAHALG DLVGIKKHFR RKHGGRRQWV CARCAKGYAV QSDYKAHLKT
201: CGTRGHSCDC GRVFSRVESF IEHQDACNSG RVRGEVVPVA TTLPVIRPAA LRHHHHHPPP PPPELQLLPA STTAPLAAAF SSNSTTTGSS SHEQHATTMT
301: TTKLQLSIGP AAVVAAASGG GGACAAAAGG EEEQQREEVR RALEEKTAAD AARERAREEA AAAERALEDA RRARHRARGE LEKALALRDH AARLIAQVTC
401: HACRQRSLAV MSMAAIDGHG ASAVAREHLR GGGVGAGI

Best Arabidopsis Sequence Match ( AT1G25250.3 )
(BLAST)

001: MIHYEQNNNL QNLPSSSSND LLLGINGADA THKRKRRPAG TPDPDAEVVS LSPRTLLESD RYVCEICNQG FQRDQNLQMH RRRHKVPWKL LKRDKKDEEV
101: RKRVYVCPEP TCLHHDPCHA LGDLVGIKKH FRRKHSVHKQ WVCERCSKGY AVQSDYKAHL KTCGSRGHSC DCGRVFSRVE SFIEHQDTCT IRQPQPTNHR
201: HLQQHTMGLD APSRTTSTAS FGPLLHGLPL LRPPRPSNQH SPAFAYPFNA SSAPFESLEL QLSIGMARTS AQARHNEKRE TSLTKERANE EARKAEETRQ
301: EAKRQIEMAE KDFEKAKRIR EEAKTELEKA HVVREEAIKR INATMMEITC HSCKQLFQLP VTADESTSSL VMSYVSSATT EGECE

Arabidopsis Description

AtIDD16IDD16 [Source:UniProtKB/TrEMBL;Acc:A0A178WG74]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.