Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G294900.1 | Wheat | nucleus | 83.13 | 84.5 |
| TraesCS4A01G008900.1 | Wheat | nucleus | 82.93 | 84.12 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 82.52 | 83.88 |
| EES05153 | Sorghum | nucleus | 82.72 | 82.89 |
| KXG30322 | Sorghum | nucleus | 79.88 | 82.74 |
| Zm00001d016632_P001 | Maize | nucleus | 84.35 | 81.69 |
| TraesCS2D01G287500.1 | Wheat | nucleus | 65.45 | 69.85 |
| TraesCS2A01G289500.1 | Wheat | nucleus | 66.67 | 67.91 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 66.06 | 67.29 |
| Os01t0242200-01 | Rice | nucleus | 33.33 | 39.52 |
| VIT_09s0054g01820.t01 | Wine grape | nucleus | 30.08 | 37.56 |
| Os01t0195000-01 | Rice | nucleus | 36.79 | 37.17 |
| Os08t0554400-02 | Rice | nucleus | 36.38 | 32.66 |
| Os09t0555700-02 | Rice | nucleus | 35.37 | 32.52 |
| Os01t0935000-01 | Rice | nucleus | 31.3 | 32.35 |
| Os01t0572300-01 | Rice | nucleus | 35.16 | 32.22 |
| Os03t0197800-00 | Rice | nucleus | 35.98 | 32.07 |
| Os10t0419200-01 | Rice | nucleus | 29.47 | 30.53 |
| Os04t0566400-02 | Rice | nucleus | 36.18 | 29.04 |
| Os02t0672100-01 | Rice | nucleus | 35.98 | 28.78 |
| Os07t0581366-00 | Rice | cytosol, nucleus | 32.72 | 25.39 |
| Os03t0237250-01 | Rice | plastid | 22.15 | 24.89 |
| Os08t0467100-01 | Rice | nucleus | 23.37 | 21.58 |
Protein Annotations
| EnsemblPlants:Os02t0518500-00 | EnsemblPlantsGene:Os02g0518500 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF48 | PFscan:PS50157 |
| ProteinID:BAD26326.1 | ProteinID:BAS78925.1 | ProteinID:EAZ23232.1 | ScanProsite:PS00028 | SMART:SM00355 | SUPFAM:SSF57667 |
| UniParc:UPI00001A5274 | UniProt:Q6H4M3 | MapMan:15.5.15 | : | : | : |
Description
indeterminate domain 7Similar to Zinc finger, C2H2-type. (Os02t0518500-00)
Coordinates
chr2:-:18839194..18842419
Molecular Weight (calculated)
54494.8 Da
IEP (calculated)
7.315
GRAVY (calculated)
-0.697
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MSHTSEEESL NNLQQQPKLE ACAAGSSKGD TVMPVVKKRR GHPGNPDPDV EVVALSPKTL LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST
101: EAKKKVYVCP EITCPHHDAT RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALAEDTSRV
201: NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN DHNSDSHLRS LSPYALVTRN TTLFSNQISP KESGFPLDGS VTSYPYMSMN SPYMSATALL
301: QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR
401: EEKDNPSIFP ENQTQHNRQD NISGVVDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL DPTALEKPIW DS
101: EAKKKVYVCP EITCPHHDAT RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK DSFITHRAFC DALAEDTSRV
201: NHSLATMVGS LHGQQQDMFS HGVPSFSSSP TDMIANLASN DHNSDSHLRS LSPYALVTRN TTLFSNQISP KESGFPLDGS VTSYPYMSMN SPYMSATALL
301: QKAAEMGAKT SQDPISPLLL KSFPNNLTSS RDHMNISSRS QGDSLGNSTV NSDCMKTTED ENSYMIGRGN ILINAPWSSG IMRPGTVPLI GLMNHPFSMR
401: EEKDNPSIFP ENQTQHNRQD NISGVVDADA GLTQDFLGLG GSGTLDMSSE TYNADVTALS YSDEQEKPQE HIYSYHQSSL DPTALEKPIW DS
001: MSSSSYNTSV IPSSSSSAQP FFITSSGTGD NDFNRKDTFM SMIQQPNSSA PPPKKRRNQP GNPNPDAEVV ALSPKTLMAT NRFICDVCNK GFQREQNLQL
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
101: HRRGHNLPWK LKQKSTKEVK RKVYLCPEPT CVHHDPSRAL GDLTGIKKHY YRKHGEKKWK CEKCSKRYAV QSDWKAHSKT CGTKEYRCDC GTIFSRRDSY
201: ITHRAFCDAL IQETARNPTV SFTSMTAASS GVGSGGIYGR LGGGSALSHH HLSDHPNFGF NPLVGYNLNI ASSDNRRDFI PQSSNPNFLI QSASSQGMLN
301: TTPNNNNQSF MNQHGLIQFD PVDNINLKSS GTNNSFFNLG FFQENTKNSE TSLPSLYSTD VLVHHREENL NAGSNVSATA LLQKATQMGS VTSNDPSALF
401: RGLASSSNSS SVIANHFGGG RIMENDNNGN LQGLMNSLAA VNGGGGSGGS IFDVQFGDNG NMSGSDKLTL DFLGVGGMVR NVNRGGGGGG RGSARGGVSL
501: DGEAKFPEQN YPFGRG
Arabidopsis Description
IDD4Protein indeterminate-domain 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8GYC1]
SUBAcon: [plastid,nucleus]
SUBAcon: [plastid,nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.