Factsheet for GSMUA_AchrUn_randomP03750_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
PTS1:	peroxisome
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P16690_001	Banana	nucleus	22.5	54.35
GSMUA_Achr2P08460_001	Banana	nucleus	19.24	54.29
GSMUA_Achr5P22140_001	Banana	nucleus	22.5	52.49
GSMUA_Achr7P13540_001	Banana	nucleus	21.03	51.23
GSMUA_Achr3P25410_001	Banana	nucleus	18.56	50.61
GSMUA_Achr7P14780_001	Banana	nucleus	20.14	50.14
GSMUA_Achr7P09150_001	Banana	nucleus	22.38	48.54
GSMUA_Achr10P...	Banana	nucleus	24.41	48.33
GSMUA_Achr2P08910_001	Banana	nucleus	20.02	46.23
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	18.67	45.6
GSMUA_Achr3P13990_001	Banana	nucleus	21.26	44.37
GSMUA_Achr9P06650_001	Banana	nucleus	18.11	43.87
GSMUA_Achr5P06450_001	Banana	nucleus	23.17	43.28
GSMUA_Achr5P11770_001	Banana	nucleus, plastid	19.24	42.96
GSMUA_Achr7P22720_001	Banana	mitochondrion	13.5	42.7
GSMUA_Achr1P17940_001	Banana	nucleus	22.27	42.4
GSMUA_Achr8P10040_001	Banana	nucleus	21.26	42.28
GSMUA_Achr10P...	Banana	nucleus	17.89	42.18
GSMUA_Achr6P27030_001	Banana	nucleus	16.65	41.81
GSMUA_Achr1P07110_001	Banana	nucleus	21.26	38.89
GSMUA_Achr9P23870_001	Banana	nucleus	18.67	38.25
GSMUA_Achr11P...	Banana	nucleus	17.55	37.68
GSMUA_Achr7P24170_001	Banana	nucleus	21.26	37.65
GSMUA_Achr10P...	Banana	nucleus	20.25	37.58
GSMUA_Achr4P04310_001	Banana	nucleus	19.24	36.15
GSMUA_AchrUn_...	Banana	mitochondrion, nucleus	19.57	35.58
GSMUA_Achr4P11810_001	Banana	mitochondrion, nucleus	19.57	35.51
GSMUA_Achr4P14030_001	Banana	nucleus	21.26	34.81
GSMUA_Achr11P...	Banana	nucleus	20.36	33.96
GSMUA_Achr1P02080_001	Banana	nucleus	20.81	33.82
GSMUA_Achr11P...	Banana	nucleus	19.35	33.66
GSMUA_Achr4P05240_001	Banana	nucleus	18.9	33.6
GSMUA_Achr4P07200_001	Banana	nucleus	20.36	33.52
GSMUA_Achr3P29940_001	Banana	nucleus	21.82	33.39
GSMUA_Achr7P25960_001	Banana	nucleus	21.71	32.6
GSMUA_Achr7P18610_001	Banana	nucleus	13.5	31.75
GSMUA_Achr5P23130_001	Banana	nucleus	13.5	31.58
GSMUA_Achr6P02490_001	Banana	nucleus	12.94	31.08
GSMUA_Achr11P...	Banana	nucleus	19.46	30.57
GSMUA_Achr10P...	Banana	nucleus	13.05	30.29
GSMUA_Achr3P20220_001	Banana	nucleus	13.39	28.07
GSMUA_Achr2P21680_001	Banana	nucleus, plastid	12.04	27.94
GSMUA_Achr10P...	Banana	nucleus	11.7	26.07

Protein Annotations

MapMan:15.5.15	Gene3D:3.30.1370.10	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	EnsemblPlantsGene:GSMUA_AchrUn_randomG03750_001	EnsemblPlants:GSMUA_AchrUn_randomP03750_001	EnsemblPlants:GSMUA_AchrUn_randomT03750_001	InterPro:IPR013087	InterPro:IPR036612
InterPro:KH_dom	InterPro:KH_dom_type_1	InterPro:KH_dom_type_1_sf	UniProt:M0U637	PFAM:PF00013	PFAM:PF00096
ScanProsite:PS00028	PFscan:PS50084	PFscan:PS50157	PANTHER:PTHR10288	PANTHER:PTHR10288:SF171	SMART:SM00322
SMART:SM00355	SUPFAM:SSF54791	SUPFAM:SSF57667	UniParc:UPI000296D7E9	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type
SEG:seg	:	:	:	:	:

Description

Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG03750_001]

Coordinates

chrchrUn_random:+:17427964..17442006

Molecular Weight (calculated)

95584.9 Da

IEP (calculated)

6.760

GRAVY (calculated)

-0.411

Length

889 amino acids

Sequence
(BLAST)

001: MITKSGLPSH DYPGSTKRIE IPNELVGIII GKTGETIKSI RLNSGAKIQV TRNMEAGPNS LTTTVELNGT PEQISSAEKL INDALAEGGF GGSNIISTQE
101: SGDMEPGPEH CHTKTPKDMI GQVLCKVGNT IENMQARSGA RMTIWLLLAS PSHLPSGGMS TESRAYLVGL MGKFEAAKQI VNQIIKGDSG DPGISFAQEL
201: GSVEPIAQKF QMKVPNDKVY AIIGKSGETI KHIRLESGAK IQLTKDTDAG PNSPTTVVEL NGTSQQISSA EKLINDVLAE GDLGCSDVIS AQESGDMEPD
301: VEHCHMKIPK NMVGVIIGES GETIKCIRLQ SGAKIQFPKD TGADSDSLTT TVELYGTIEQ IMSAMKLIDD ALAEGGSVDP GTAFAKESSR MEPGAEWYEM
401: KFPSDKVGAI IGESGETIKR IQLQSGAKIQ FPKDTGADSD SLTTTVTMYG TIEQMRSAEK LINDAIAESR RTEPGSELLE MKLPSDKVGA IIGKSGETIK
501: RIRLQSGAKI QFTEDTGADT DSPTTTVELF GTIEQITSAK KLINDALAKD DSGGCFIGSD STSLDLAFPH CSPNPFPQSS FASPTPNPTK KKRNLPGNPD
601: PDAEVIALSP KTLMTTNRFV CEICNKGFPR EQNLQLHRRG HNLPWKLKQR SSKEVRKKVY LCPEVTCVHH DPSRALGDLT GIKKHFSRKH GEKKWKCDKC
701: SKKYAVQSDW KAHSKICGTR EYRCDCGILF SRRDSFITHR AFCDALAEES ARAMAANPLT NHQALLFSPA AASSEHGRED PVPHPPLPPA FPHALAPSPH
801: MSATALLQKA AEMGATMSRP AHLDMVATSL SATPGGGMND GMTRDFLGLK AFPHRNILDL TGLDPCLTAA AASSSSSAYE QQSMKPWNG

Best Arabidopsis Sequence Match ( AT1G55110.1 )
(BLAST)

001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD

Arabidopsis Description

IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.