Factsheet for TraesCS2B01G421100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G400300.2	Wheat	nucleus	99.18	91.69
TraesCS2A01G403200.2	Wheat	nucleus	98.04	90.5
CDY04118	Canola	nucleus	16.99	87.39
CDY09390	Canola	nucleus	16.83	86.55
EES11271	Sorghum	nucleus	83.82	85.64
Os04t0566400-02	Rice	nucleus	82.19	82.06
Zm00001d026113_P006	Maize	nucleus	78.92	80.63
Zm00001d002654_P003	Maize	nucleus	81.37	78.67
TraesCS6B01G271000.1	Wheat	nucleus	68.46	72.74
Os02t0672100-01	Rice	nucleus	71.73	71.38
CDY53540	Canola	nucleus	20.91	65.98
CDY04117	Canola	nucleus	22.88	65.42
KRG89168	Soybean	nucleus, plastid	33.01	58.05
TraesCS5B01G358600.1	Wheat	nucleus, plastid	41.18	46.15
GSMUA_Achr10P...	Banana	nucleus	34.8	44.47
KRH49489	Soybean	nucleus, plastid	38.56	44.28
KRG90705	Soybean	nucleus	40.69	43.92
VIT_01s0010g02100.t01	Wine grape	nucleus	40.85	43.71
CDY03081	Canola	nucleus	37.09	43.32
KRH36039	Soybean	nucleus	40.2	43.08
CDY17615	Canola	nucleus	36.93	42.88
KRG89167	Soybean	nucleus, plastid	38.07	42.44
CDY59418	Canola	nucleus	28.43	42.13
KRH49485	Soybean	nucleus	37.25	41.99
TraesCS3B01G195900.1	Wheat	nucleus	33.5	41.75
CDY17440	Canola	nucleus	32.52	41.63
PGSC0003DMT400075837	Potato	nucleus	34.97	41.31
Bra024834.1-P	Field mustard	nucleus, plastid	36.93	40.94
CDY45271	Canola	nucleus	27.78	40.87
TraesCS3B01G123600.1	Wheat	nucleus	33.17	40.85
Solyc04g008500.2.1	Tomato	nucleus	34.31	40.62
CDY15814	Canola	nucleus	31.37	40.59
TraesCS6B01G154000.1	Wheat	nucleus	26.96	40.34
TraesCS3B01G237700.1	Wheat	nucleus	31.05	40.25
AT2G02080.3	Thale cress	nucleus, plastid	33.82	40.12
KRH34792	Soybean	nucleus	36.27	40.0
CDY15811	Canola	nucleus	37.09	39.96
CDY09391	Canola	nucleus	36.93	39.86
Bra026616.1-P	Field mustard	nucleus	33.17	39.73
KRG91985	Soybean	nucleus	36.27	39.64
Bra026819.1-P	Field mustard	nucleus	30.07	39.4
CDX81653	Canola	nucleus	29.9	39.19
CDY45270	Canola	nucleus	28.59	38.89
Bra026204.1-P	Field mustard	nucleus, plastid	28.59	38.89
Bra040974.1-P	Field mustard	nucleus, plastid	36.93	38.63
GSMUA_Achr11P...	Banana	nucleus	35.62	38.52
CDY17614	Canola	nucleus, plastid	32.19	38.4
AT2G02070.2	Thale cress	nucleus	37.75	38.37
Bra026617.1-P	Field mustard	nucleus	36.93	38.31
Bra024833.1-P	Field mustard	plastid	32.03	38.21
CDY03080	Canola	nucleus, plastid	31.54	37.4
AT1G14580.3	Thale cress	nucleus	29.25	37.21
TraesCS4B01G262400.1	Wheat	nucleus	32.03	37.12
Bra026203.1-P	Field mustard	nucleus, plastid	27.94	36.85
TraesCS4B01G296200.1	Wheat	nucleus	29.09	36.78
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	39.71	36.76
TraesCS3B01G497200.1	Wheat	nucleus	29.25	35.03
TraesCS2B01G306100.1	Wheat	nucleus	27.29	34.58
Bra023223.1-P	Field mustard	plastid	26.8	34.17
CDY12268	Canola	nucleus	23.69	32.51
CDY68983	Canola	nucleus	19.61	30.69
TraesCS4B01G230800.1	Wheat	nucleus, plastid	19.28	29.14
TraesCS5B01G232200.1	Wheat	nucleus	20.26	25.2
TraesCS2B01G218900.1	Wheat	nucleus	29.74	22.69

Protein Annotations

EnsemblPlants:TraesCS2B01G421100.1	EnsemblPlantsGene:TraesCS2B01G421100	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	InterPro:Znf_C2H2_jaz	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF63
PFAM:PF12171	PFscan:PS50157	ScanProsite:PS00028	SEG:seg	SMART:SM00355	SUPFAM:SSF57667
MapMan:15.5.15	:	:	:	:	:

Description

No Description!

Coordinates

chr2B:-:605377502..605382973

Molecular Weight (calculated)

63569.3 Da

IEP (calculated)

8.564

GRAVY (calculated)

-0.516

Length

612 amino acids

Sequence
(BLAST)

001: MASNSSAAAA AAFFGMRDGD QQDQLKPLIS QQQQQHQQQL AAVALSGVGS AAPAASSQGA PAAAPPAKKK RTLPDPDAEV IALSPKTLMA TNRFVCEVCN
101: KGFQREQNLQ LHRRGHNLPW KLKQKNPNQV QRRRVYLCPE PTCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS KICGTREYRC
201: DCGTLFSRRD SFITHRAFCD ALAQESARLP PTSLSSLTSH LYGATNAGNM ALSLSQVGSH LNSTLQHDGH HHHPSPELLR LGGAAGGGSS SIAARLDHLL
301: SPSGASAFRP PQQQPQSAFF LNAAPGQDFG DDAGNGPQSY LQSKPFHGLM QLPDLQGNGA GGPASSGHGL FNLGFFSNNG NSSGSSHEHA SQGMMSNDQF
401: SGGAGGGGGG GSEVSAAAIF GGNFVGGDHI SQAGMYNDQA PMLPQMSATA LLQKAAQMGA TSSPNGAASM FRGFVGSSPH ARQGTPQQQM DQNDANLNEL
501: MNSLAAGGGV NAAAMFGGAN GGPAGMFDPR MCDMDQHEVK FSQGGGGVGG NGGGAGGGAG GDMTRDFLGV GGGGIVRGIS TPRGDHHQSS SDMSSLEAEM
601: KSASSFNGGR MP

Best Arabidopsis Sequence Match ( AT2G02070.1 )
(BLAST)

001: MAASSSSAAS FFGVRQDDQS HLLPPNSSAA APPPPPPHHQ APLPPLEAPP QKKKRNQPRT PNSDAEVIAL SPKTLMATNR FICEVCNKGF QREQNLQLHR
101: RGHNLPWKLK QKSTKEVKRK VYLCPEPSCV HHDPSRALGD LTGIKKHYYR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TKEYRCDCGT LFSRRDSFIT
201: HRAFCDALAQ ESARHPTSLT SLPSHHFPYG QNTNNSNNNA SSMILGLSHM GAPQNLDHQP GDVLRLGSGG GGGGAASRSS SDLIAANASG YFMQEQNPSF
301: HDQQDHHHHH QQGFLAGNNN IKQSPMSFQQ NLMQFSHDNH NSAPSNVFNL SFLSGNNGVT SATSNPNAAA AAAVSSGNLM ISNHYDGENA VGGGGEGSTG
401: LFPNNLMSSA DRISSGSVPS LFSSSMQSPN SAPHMSATAL LQKAAQMGST SSNNNNGSNT NNNNNASSIL RSFGSGIYGE NESNLQDLMN SFSNPGATGN
501: VNGVDSPFGS YGGVNKGLSA DKQSMTRDFL GVGQIVKSMS GSGGFQQQQQ QQQQQQQQQQ HGNSRERVGS SSDSADRSSM NVNTGGGPAS TSPPYGIHHA
601: SF

Arabidopsis Description

IDD5Protein indeterminate-domain 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUL3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.