Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G107300.1 | Wheat | nucleus | 95.57 | 97.34 |
| TraesCS3A01G105100.1 | Wheat | nucleus | 96.58 | 96.77 |
| Zm00001d039467_P001 | Maize | nucleus | 72.84 | 72.84 |
| Zm00001d008842_P001 | Maize | nucleus | 68.01 | 72.38 |
| EES02307 | Sorghum | nucleus | 71.63 | 71.49 |
| Os01t0195000-01 | Rice | nucleus | 69.22 | 70.64 |
| CDY70142 | Canola | nucleus | 21.33 | 58.24 |
| KRH47108 | Soybean | nucleus | 45.07 | 44.98 |
| KRH10015 | Soybean | nucleus | 41.45 | 43.37 |
| KRH23306 | Soybean | nucleus | 41.65 | 43.12 |
| Bra030886.1-P | Field mustard | nucleus | 37.22 | 42.33 |
| KRH44134 | Soybean | nucleus | 45.07 | 42.26 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 40.04 | 42.16 |
| AT1G55110.2 | Thale cress | nucleus | 38.23 | 41.76 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 34.0 | 41.32 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 43.46 | 40.6 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 38.83 | 39.31 |
| PGSC0003DMT400006385 | Potato | nucleus | 40.64 | 37.34 |
| Solyc03g121660.2.1 | Tomato | nucleus | 40.64 | 37.27 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 36.02 | 36.98 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 38.83 | 36.55 |
| PGSC0003DMT400012504 | Potato | nucleus | 36.82 | 36.45 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 40.04 | 36.45 |
| Solyc06g062670.2.1 | Tomato | nucleus | 36.82 | 36.38 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 34.0 | 34.99 |
| TraesCS3B01G497200.1 | Wheat | nucleus | 34.81 | 33.86 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 40.85 | 33.17 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 38.43 | 33.16 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 24.95 | 30.62 |
| CDY70938 | Canola | cytosol, nucleus | 16.1 | 29.3 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 23.54 | 23.78 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 36.42 | 22.57 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G123600.1 | EnsemblPlantsGene:TraesCS3B01G123600 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SMART:SM00355 | SUPFAM:SSF57667 | MapMan:15.5.15 | : |
Description
No Description!
Coordinates
chr3B:-:95460237..95461962
Molecular Weight (calculated)
52888.8 Da
IEP (calculated)
8.676
GRAVY (calculated)
-0.565
Length
497 amino acids
Sequence
(BLAST)
(BLAST)
001: MMLKDFAAIQ QQQQQQLALA ADENMSNLTS ASGDQTSVSS HPLPPPSKKK RSLPGNPDPD AEVIALSPRA LMATNRYVCE ICGKGFQRDQ NLQLHRRGHN
101: LPWKLKQRNP NEVVRKKVYV CPEPGCVHHD RSRALGDLTG IKKHFSRKHG EKKWKCDKCA KRYAVQSDWK AHSKVCGTRE YRCDCGTLFS RRDSFITHRA
201: FCDALAEESA RAVAVAVEEH QHPGMLYSHG GGGAGFQMPA VMDPSSSLGG GHGLIQELCL KREREQQQQQ QQFAQPWLSE QQQQQLEMAG EGAQAMFGTA
301: RMEQEFNASS TPESSTQPVG MSFASFPSSS AAPSAAGATA SSHMSATALL QKAAQMGATL SRPSGQGQMA ASTFSSSSSA AITNVTNNAP AAATSSSAAT
401: STVGVGFGHA FEAPAHFGVD QRPSANRNAG NAGVGGAGRG NAGGANDGLT RDFLGLRAFS HGDILSMGGF DPCMPTSASA RAAYDQQGPQ SSNPWHG
101: LPWKLKQRNP NEVVRKKVYV CPEPGCVHHD RSRALGDLTG IKKHFSRKHG EKKWKCDKCA KRYAVQSDWK AHSKVCGTRE YRCDCGTLFS RRDSFITHRA
201: FCDALAEESA RAVAVAVEEH QHPGMLYSHG GGGAGFQMPA VMDPSSSLGG GHGLIQELCL KREREQQQQQ QQFAQPWLSE QQQQQLEMAG EGAQAMFGTA
301: RMEQEFNASS TPESSTQPVG MSFASFPSSS AAPSAAGATA SSHMSATALL QKAAQMGATL SRPSGQGQMA ASTFSSSSSA AITNVTNNAP AAATSSSAAT
401: STVGVGFGHA FEAPAHFGVD QRPSANRNAG NAGVGGAGRG NAGGANDGLT RDFLGLRAFS HGDILSMGGF DPCMPTSASA RAAYDQQGPQ SSNPWHG
001: MMMNRDILFH QQQQQQMEEN MSNLTSASGD QASVSSGNRT ETSGSNINQH HQEQCFVPQS SLKRKRNQPG NPDPEAEVMA LSPKTLMATN RFICEVCNKG
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
101: FQRDQNLQLH KRGHNLPWKL KQRSNKDVVR KKVYVCPEPG CVHHHPSRAL GDLTGIKKHF FRKHGEKKWK CEKCSKKYAV QSDWKAHAKT CGTKEYKCDC
201: GTLFSRRDSF ITHRAFCDAL AEESARAMPN PIMIQASNSP HHHHHQTQQN IGFSSSSQNI ISNSNLHGPM KQEESQHHYQ NIPPWLISSN PNPNGNNGNL
301: FPPVASSVNT GRSSFPHPSP AMSATALLQK AAQMGSTKST TPEEEERSSR SSYNNLITTT MAAMMTSPPE PGFGFQDYYM MNHQHHGGGE AFNGGFVPGE
401: EKNDVVDDGG GETRDFLGLR SLMSHNEILS FANNLGNCLN TSATEQQQQQ HSHQD
Arabidopsis Description
IDD7Protein indeterminate-domain 7 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.