Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G449900.1 | Wheat | nucleus | 92.37 | 92.73 |
| Os01t0935000-01 | Rice | nucleus | 56.36 | 60.5 |
| Zm00001d042202_P001 | Maize | nucleus | 59.1 | 57.52 |
| EES04172 | Sorghum | nucleus | 56.95 | 55.96 |
| GSMUA_Achr11P... | Banana | nucleus | 41.29 | 50.97 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 31.7 | 39.61 |
| TraesCS3B01G195900.1 | Wheat | nucleus | 36.2 | 37.68 |
| PGSC0003DMT400063501 | Potato | nucleus | 25.83 | 36.67 |
| Solyc01g099340.2.1 | Tomato | nucleus | 30.33 | 36.56 |
| VIT_14s0060g02440.t01 | Wine grape | nucleus, plastid | 36.4 | 35.03 |
| TraesCS3B01G123600.1 | Wheat | nucleus | 33.86 | 34.81 |
| TraesCS3B01G237700.1 | Wheat | nucleus | 32.09 | 34.75 |
| TraesCS4B01G262400.1 | Wheat | nucleus | 35.42 | 34.28 |
| Solyc09g074780.2.1 | Tomato | nucleus, plastid | 34.44 | 33.85 |
| KRG92880 | Soybean | nucleus | 34.83 | 33.65 |
| KRH71547 | Soybean | nucleus | 28.57 | 33.56 |
| KRH33908 | Soybean | nucleus, plastid | 34.83 | 33.33 |
| KRG96409 | Soybean | nucleus | 34.83 | 33.27 |
| TraesCS4B01G296200.1 | Wheat | nucleus | 31.51 | 33.26 |
| KRH68532 | Soybean | nucleus | 33.27 | 33.2 |
| TraesCS5B01G358600.1 | Wheat | nucleus, plastid | 35.23 | 32.97 |
| PGSC0003DMT400029550 | Potato | nucleus | 29.16 | 32.89 |
| KRG96824 | Soybean | nucleus | 32.49 | 32.74 |
| KRH68150 | Soybean | nucleus | 28.57 | 32.23 |
| TraesCS2B01G306100.1 | Wheat | nucleus | 29.55 | 31.26 |
| TraesCS6B01G271000.1 | Wheat | nucleus | 34.83 | 30.9 |
| TraesCS4B01G230800.1 | Wheat | nucleus, plastid | 24.07 | 30.37 |
| VIT_07s0104g01620.t01 | Wine grape | nucleus | 34.83 | 29.77 |
| TraesCS2B01G421100.1 | Wheat | nucleus | 35.03 | 29.25 |
| TraesCS5B01G232200.1 | Wheat | nucleus | 24.27 | 25.2 |
| TraesCS2B01G218900.1 | Wheat | nucleus | 32.88 | 20.95 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G497200.1 | EnsemblPlantsGene:TraesCS3B01G497200 | Gene3D:3.30.160.60 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF44 | PFscan:PS50157 |
| ScanProsite:PS00028 | SEG:seg | SUPFAM:SSF57667 | MapMan:15.5.15 | : | : |
Description
No Description!
Coordinates
chr3B:-:740543739..740546708
Molecular Weight (calculated)
54141.7 Da
IEP (calculated)
7.906
GRAVY (calculated)
-0.458
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MRSCMPPMAC GATGTGECTG SFSSVSSTVE GLGEEFRLPY HGKPPFLAGS PPEIREDDGD LRLVIAGTSD SLSTPPAATK KKKKRSLPGT PDPSAEVIAL
101: SPRTLMATNR FVCEICHKGF QRDQNLQLHR RGHNLPWKLR QRGAEGGAAP RKRAYVCPEP ACVHHDPRRA LGDLTGIKKH FCRKHGEKKW KCDRCAKRYA
201: VHSDWKAHAK VCGTREYRCD CGTLFSRRDS FVTHRAFCDA LAQENSKLAQ PAMNMATVAS ALQGQQHAHH HNLMLPSTHA DDLDMDADEA SAFEPDIKSP
301: HLKMFSDYDA DAADADNPLG CMLSSLGAAP SAFSPSSRLS MLGLQAGPSD AASMGGCYSP GNGGLASMSA TALLQKAAQM GATTSSGYGV SFTPGHPGLA
401: STMAALDRFP CTGGPFGGPT RAFGAYDGVV GFGVGGLMPG QLYNDGANGG TTRNAGPAVS GADNPMDDER RRAAAGDDVR VVDYMGVEHQ RTSYGSVSSA
501: SPFADYTGPW P
101: SPRTLMATNR FVCEICHKGF QRDQNLQLHR RGHNLPWKLR QRGAEGGAAP RKRAYVCPEP ACVHHDPRRA LGDLTGIKKH FCRKHGEKKW KCDRCAKRYA
201: VHSDWKAHAK VCGTREYRCD CGTLFSRRDS FVTHRAFCDA LAQENSKLAQ PAMNMATVAS ALQGQQHAHH HNLMLPSTHA DDLDMDADEA SAFEPDIKSP
301: HLKMFSDYDA DAADADNPLG CMLSSLGAAP SAFSPSSRLS MLGLQAGPSD AASMGGCYSP GNGGLASMSA TALLQKAAQM GATTSSGYGV SFTPGHPGLA
401: STMAALDRFP CTGGPFGGPT RAFGAYDGVV GFGVGGLMPG QLYNDGANGG TTRNAGPAVS GADNPMDDER RRAAAGDDVR VVDYMGVEHQ RTSYGSVSSA
501: SPFADYTGPW P
001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI
Arabidopsis Description
MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.