Factsheet for VIT_14s0060g02440.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P10040_001	Banana	nucleus	41.81	49.66
VIT_12s0028g03030.t01	Wine grape	nucleus	35.78	44.5
KRG92880	Soybean	nucleus	43.88	44.05
KRH33908	Soybean	nucleus, plastid	43.88	43.63
KRH68532	Soybean	nucleus	41.24	42.77
VIT_04s0023g01430.t01	Wine grape	nucleus	40.68	42.69
VIT_00s0179g00170.t01	Wine grape	nucleus, plastid	35.59	42.66
GSMUA_Achr11P...	Banana	nucleus	33.15	42.51
KRG96824	Soybean	nucleus	40.11	42.01
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	37.66	40.32
VIT_09s0054g01820.t01	Wine grape	nucleus	29.57	39.85
VIT_09s0002g02300.t01	Wine grape	nucleus	39.36	39.29
VIT_06s0004g03070.t01	Wine grape	nucleus	36.35	38.68
VIT_08s0040g02100.t01	Wine grape	nucleus	35.59	38.41
Os01t0935000-01	Rice	nucleus	33.9	37.82
VIT_04s0008g01160.t01	Wine grape	nucleus	37.29	37.64
VIT_07s0104g01620.t01	Wine grape	nucleus	41.24	36.62
EES04172	Sorghum	nucleus	35.78	36.54
TraesCS3B01G497200.1	Wheat	nucleus	35.03	36.4
Zm00001d042202_P001	Maize	nucleus	35.78	36.19
TraesCS3D01G449900.1	Wheat	nucleus	34.46	35.95
VIT_01s0010g02100.t01	Wine grape	nucleus	38.23	35.49
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	37.1	29.8
VIT_01s0011g06400.t01	Wine grape	nucleus	23.73	29.65
VIT_17s0000g01870.t01	Wine grape	nucleus	22.79	26.59

Protein Annotations

EntrezGene:100263074	wikigene:100263074	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB61845	ProteinID:CCB61845.1
UniProt:F6I4K8	EMBL:FN596746	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100263074	wikigene:LOC100263074	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593
PANTHER:PTHR10593:SF34	SMART:SM00355	SUPFAM:SSF57667	TIGR:TC60277	UniParc:UPI00015C9708	ArrayExpress:VIT_14s0060g02440
EnsemblPlantsGene:VIT_14s0060g02440	EnsemblPlants:VIT_14s0060g02440.t01	unigene:Vvi.74	RefSeq:XP_002284051	RefSeq:XP_002284051.1	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr14:-:2059341..2063219

Molecular Weight (calculated)

58005.2 Da

IEP (calculated)

9.064

GRAVY (calculated)

-0.711

Length

531 amino acids

Sequence
(BLAST)

001: MSNITAGDGG SFSSGTNGGE EVQQQPVNNL HGLSSSVPSS TSNNSNGSIS QQQPPPAKKK RNLPGNPDPS AEVIALSPTT LMATNRFVCE ICNKGFQRDQ
101: NLQLHRRGHN LPWKLRQRSS TEIRKRVYVC PEPSCVHHNP ARALGDLTGI KKHFCRKHGE KKWKCDKCSK KYAVQSDWKA HSKTCGTREY KCDCGTIFSR
201: RDSFITHRAF CDALAEENTK VNQGLANTMR RNLQIQGQVS ELLSSMPLNN NPNSTMGLSE FTHSDSKNHL KTLPHEPMPV PPKPLNMAAA GMFSTTSGSL
301: FGCPITASSP SSSSRLQLST NSSSPSFENG QQLPPPPAST LMSATALLQK AAQMGATAST KMNNSPPKGF VTSMAPTPFG GILLQKNSSS NDHHLQADPT
401: QFLNQFFYQN DGAESEVMSE MGMFSGLFDQ NHGLFKNMEH HEHSNSNNIL AAKTTNPGLS STPRNGKTDT MTVDFLGIGG ARPGNFHGQQ QQQQEMFEGM
501: NINHPRMQGF SSFEQHIAHG QAAMEKTMWE A

Best Arabidopsis Sequence Match ( AT3G50700.1 )
(BLAST)

001: MPVDLDNSST VSGEASVSIS STGNQNPLPN STGKKKRNLP GMPDPESEVI ALSPKTLLAT NRFVCEICNK GFQRDQNLQL HRRGHNLPWK LRQKSNKEVK
101: KKVYVCPEVS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKKYAV QSDWKAHSKI CGTKEYKCDC GTLFSRRDSF ITHRAFCDAL AEENARSHHS
201: QSKKQNPEIL TRKNPVPNPV PAPVDTESAK IKSSSTLTIK QSESPKTPPE IVQEAPKPTS LNVVTSNGVF AGLFESSSAS PSIYTTSSSS KSLFASSSSI
301: EPISLGLSTS HGSSFLGSNR FHAQPAMSAT ALLQKAAQMG AASSGGSLLH GLGIVSSTST SIDAIVPHGL GLGLPCGGES SSGLKELMMG NSSVFGPKQT
401: TLDFLGLGRA VGNGNGPSNG LSTLVGGGTG IDMATTFGSG EFSGKDISRR KS

Arabidopsis Description

IDD2Protein indeterminate-domain 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.