Factsheet for VIT_00s0179g00170.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH67268	Soybean	nucleus	44.7	75.86
KRG95590	Soybean	nucleus	65.01	62.61
KRH71370	Soybean	nucleus	62.3	60.26
KRH32064	Soybean	nucleus	61.85	59.18
GSMUA_Achr3P25410_001	Banana	nucleus	37.25	50.61
CDX97281	Canola	nucleus, plastid	42.21	48.57
AT4G02670.2	Thale cress	nucleus, plastid	43.79	48.02
GSMUA_Achr2P08910_001	Banana	nucleus	40.63	46.75
Bra018535.1-P	Field mustard	plastid	42.44	46.53
CDX91304	Canola	nucleus, plastid	42.44	46.53
PGSC0003DMT400049788	Potato	nucleus	46.28	42.98
Solyc09g065670.2.1	Tomato	nucleus	45.15	42.55
VIT_12s0028g03030.t01	Wine grape	nucleus	40.86	42.39
VIT_18s0001g12220.t01	Wine grape	nucleus, plastid	43.57	38.91
TraesCS6B01G154000.1	Wheat	nucleus	35.44	38.39
TraesCS6D01G116300.1	Wheat	nucleus	35.21	38.24
VIT_04s0023g01430.t01	Wine grape	nucleus	43.57	38.14
KXG38489	Sorghum	nucleus	36.57	37.85
VIT_09s0002g02300.t01	Wine grape	nucleus	45.15	37.59
TraesCS6A01G126000.1	Wheat	nucleus	35.44	37.56
VIT_04s0008g01160.t01	Wine grape	nucleus	44.24	37.26
VIT_08s0040g02100.t01	Wine grape	nucleus	41.31	37.2
Zm00001d032922_P001	Maize	nucleus	36.34	36.93
VIT_06s0004g03070.t01	Wine grape	nucleus	41.53	36.87
VIT_14s0060g02440.t01	Wine grape	nucleus, plastid	42.66	35.59
Os10t0419200-01	Rice	nucleus	37.47	34.95
VIT_09s0054g01820.t01	Wine grape	nucleus	30.93	34.77
VIT_01s0010g02100.t01	Wine grape	nucleus	42.66	33.04
CDY67587	Canola	cytosol, nucleus	16.25	32.0
VIT_07s0104g01620.t01	Wine grape	nucleus	41.08	30.43
VIT_01s0011g06400.t01	Wine grape	nucleus	28.44	29.65
VIT_01s0010g02090.t01	Wine grape	extracellular, vacuole	41.99	28.14
VIT_17s0000g01870.t01	Wine grape	nucleus	27.31	26.59

Protein Annotations

EntrezGene:100252929	wikigene:100252929	MapMan:15.5.15	Gene3D:3.30.160.60	ProteinID:CCB49579	ProteinID:CCB49579.1
UniProt:F6HBI4	EMBL:FN595511	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087
EntrezGene:LOC100252929	wikigene:LOC100252929	ScanProsite:PS00028	PFscan:PS50157	PANTHER:PTHR10593	PANTHER:PTHR10593:SF65
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002108763	ArrayExpress:VIT_00s0179g00170	EnsemblPlantsGene:VIT_00s0179g00170	EnsemblPlants:VIT_00s0179g00170.t01
RefSeq:XP_002274683	RefSeq:XP_002274683.2	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:7430957..7434405

Molecular Weight (calculated)

49409.2 Da

IEP (calculated)

9.206

GRAVY (calculated)

-0.703

Length

443 amino acids

Sequence
(BLAST)

001: MSNSTSLSEE ASVSSGTRVQ DFSSLNPVVS GISSQQQNQQ KIKKKRNLPG NPDPDAEVIA LSPKTLLATN RFVCEICNKG FQRDQNLQLH RRGHNLPWKL
101: KQRNSKEIKK KAYVCPEPTC VHHHPSRALG DLTGIKKHFC RKHGEKKWKC EKCSKIYAVQ SDWKAHSKTC GTREYRCDCG TLFSRKDSFI THRAFCDALA
201: EESARLSVMN STNQLLNLHP QNPCSFFPAF STHHQQQQHF PNPPTHISLT SWDSPQNPNP NNPNQSPLQI KPEIHHLQIP SPISPQFFQE QPPPPPPTQQ
301: KNLMTSPFQN FHVSTQPTSA HLSATALLQK AATVGATANI SFTGSSQSHM SRLHMAELGS FPHVGAGISP EYLGFASGNL STWQKSDRLT RDFLGLTGES
401: GGSVNVSVNM RDMLQYTGGV EFQPYDRDHS LLKAHGFETW GDC

Best Arabidopsis Sequence Match ( AT4G02670.2 )
(BLAST)

001: MDMFSSHSLS YKLSSLSTEA SASSGNNTLS TIQEFSGFHN VISSVCTHTE THKPKKKRGL PGNPDPDAEV IALSPKTLLA TNRFVCEICN KGFQRDQNLQ
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPE TNCAHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KICGTRDYRC DCGTLFSRKD
201: TFITHRAFCD ALAEESARLH STSSSNLTNP NPNFQGHHFM FNKSSSLLFT SSPLFIEPSL STAALSTPPT AALSATALLQ KATSLSSTTF GGGGQTRSIG
301: HHRHLTNVNE FLGVDRVMMT SASSSEYDQL VVDGFTSTWQ KADRLTRDFL GLTGHGGHVS VRPGDMLEYA GGVAFPMSAY DTESHDHSFQ KAYDHLGFSG
401: AHRM

Arabidopsis Description

AtIDD12Indeterminate(ID)-domain 12 [Source:UniProtKB/TrEMBL;Acc:A0A1P8B4I0]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.