Subcellular Localization
min:
: max
Winner_takes_all: nucleus, plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX97281 | Canola | nucleus, plastid | 94.31 | 98.96 |
| Bra018535.1-P | Field mustard | plastid | 98.02 | 98.02 |
| CDY67587 | Canola | cytosol, nucleus | 53.96 | 96.89 |
| CDY09390 | Canola | nucleus | 24.01 | 81.51 |
| CDY04118 | Canola | nucleus | 24.01 | 81.51 |
| AT4G02670.2 | Thale cress | nucleus, plastid | 81.44 | 81.44 |
| CDY14910 | Canola | nucleus | 23.02 | 69.92 |
| CDY37489 | Canola | nucleus | 31.44 | 69.02 |
| CDY72283 | Canola | nucleus | 29.95 | 64.02 |
| CDY53540 | Canola | nucleus | 29.46 | 61.34 |
| KRH67268 | Soybean | nucleus | 37.87 | 58.62 |
| CDY04117 | Canola | nucleus | 30.94 | 58.41 |
| CDY70142 | Canola | nucleus | 25.25 | 56.04 |
| GSMUA_Achr3P25410_001 | Banana | nucleus | 38.86 | 48.16 |
| CDX96046 | Canola | nucleus | 26.24 | 45.49 |
| GSMUA_Achr2P08910_001 | Banana | nucleus | 41.83 | 43.9 |
| VIT_00s0179g00170.t01 | Wine grape | nucleus, plastid | 46.53 | 42.44 |
| KRG95590 | Soybean | nucleus | 46.29 | 40.65 |
| KRH32064 | Soybean | nucleus | 45.79 | 39.96 |
| Solyc09g065670.2.1 | Tomato | nucleus | 46.29 | 39.79 |
| KRH71370 | Soybean | nucleus | 45.05 | 39.74 |
| PGSC0003DMT400049788 | Potato | nucleus | 46.53 | 39.41 |
| CDY24490 | Canola | nucleus | 42.08 | 39.08 |
| CDX77936 | Canola | nucleus | 42.08 | 38.99 |
| CDX75732 | Canola | nucleus | 42.57 | 38.83 |
| TraesCS6D01G116300.1 | Wheat | nucleus | 38.37 | 37.99 |
| TraesCS6B01G154000.1 | Wheat | nucleus | 38.37 | 37.9 |
| TraesCS6A01G126000.1 | Wheat | nucleus | 39.11 | 37.8 |
| CDX82515 | Canola | nucleus | 40.59 | 37.19 |
| CDX86010 | Canola | nucleus | 40.35 | 36.38 |
| CDY51742 | Canola | nucleus | 43.32 | 36.16 |
| CDX97521 | Canola | nucleus | 43.32 | 36.08 |
| CDY67009 | Canola | nucleus | 42.33 | 35.92 |
| CDY55238 | Canola | nucleus | 43.07 | 35.8 |
| CDY53836 | Canola | nucleus | 39.6 | 35.32 |
| CDY18188 | Canola | nucleus | 41.58 | 35.07 |
| CDX89862 | Canola | nucleus | 41.58 | 35.0 |
| CDY22307 | Canola | nucleus | 40.1 | 34.91 |
| KXG38489 | Sorghum | nucleus | 36.88 | 34.81 |
| CDX94759 | Canola | nucleus | 39.85 | 34.7 |
| CDX81372 | Canola | nucleus | 41.83 | 34.56 |
| CDY57128 | Canola | nucleus | 41.58 | 34.15 |
| CDY59418 | Canola | nucleus | 34.9 | 34.14 |
| Zm00001d032922_P001 | Maize | nucleus | 36.63 | 33.95 |
| CDY32514 | Canola | nucleus | 41.09 | 33.88 |
| CDY45271 | Canola | nucleus | 34.16 | 33.17 |
| CDY11241 | Canola | nucleus | 41.09 | 33.0 |
| CDX80854 | Canola | nucleus | 41.09 | 32.87 |
| CDY44344 | Canola | nucleus | 40.35 | 32.6 |
| CDY10404 | Canola | nucleus | 40.84 | 32.54 |
| CDY15814 | Canola | nucleus | 37.62 | 32.14 |
| CDY03081 | Canola | nucleus | 41.58 | 32.06 |
| CDY17440 | Canola | nucleus | 37.87 | 32.01 |
| CDX70328 | Canola | nucleus | 40.59 | 31.91 |
| CDY17615 | Canola | nucleus | 41.58 | 31.88 |
| Os10t0419200-01 | Rice | nucleus | 37.38 | 31.79 |
| CDY17614 | Canola | nucleus, plastid | 40.35 | 31.77 |
| CDX81653 | Canola | nucleus | 36.63 | 31.69 |
| CDY03080 | Canola | nucleus, plastid | 40.1 | 31.4 |
| CDY45270 | Canola | nucleus | 33.91 | 30.44 |
| CDY15811 | Canola | nucleus | 41.58 | 29.58 |
| CDY04204 | Canola | nucleus | 26.24 | 29.53 |
| CDY09391 | Canola | nucleus | 41.34 | 29.45 |
| CDY36123 | Canola | nucleus | 27.48 | 29.37 |
| CDY51986 | Canola | nucleus | 27.48 | 29.37 |
| CDY04203 | Canola | plastid | 27.23 | 28.57 |
| CDX84974 | Canola | nucleus | 26.73 | 28.2 |
| CDY60366 | Canola | nucleus | 26.49 | 27.94 |
| CDY07400 | Canola | nucleus | 27.97 | 27.36 |
| CDY17620 | Canola | nucleus | 28.47 | 25.9 |
| CDY09400 | Canola | nucleus | 27.97 | 25.8 |
| CDY15800 | Canola | nucleus | 27.97 | 25.57 |
| CDY60095 | Canola | nucleus | 27.97 | 25.57 |
| CDY04102 | Canola | nucleus | 28.22 | 25.39 |
| CDY63960 | Canola | nucleus | 28.22 | 25.28 |
| CDY12268 | Canola | nucleus | 27.48 | 24.89 |
| CDY70938 | Canola | cytosol, nucleus | 16.34 | 24.18 |
| CDY68983 | Canola | nucleus | 22.03 | 22.76 |
Protein Annotations
| MapMan:15.5.15 | Gene3D:3.30.160.60 | GO:A0A078DS05 | EnsemblPlants:CDX91304 | ProteinID:CDX91304 | ProteinID:CDX91304.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00152561001 | InterPro:IPR013087 | ScanProsite:PS00028 |
| PFscan:PS50157 | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF65 | SMART:SM00355 | SUPFAM:SSF57667 | UniParc:UPI0004EC0326 |
| InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | SEG:seg | : | : | : |
Description
BnaC02g27150D
Coordinates
chrLK031866:-:1354529..1356995
Molecular Weight (calculated)
44656.6 Da
IEP (calculated)
9.274
GRAVY (calculated)
-0.569
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMFSSRNWS YRPSSLSAEA NASSGNTVSA IQDFNGLNNV ISSRLCTHTE TQKTKKRRGV PGNPDPDAEV VALSPKTLLA TNRFVCEICN KGFQRDQNLQ
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPD TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KVCGTREYRC DCGTLFSRKD
201: SFITHRAFCD ALAEESARII SIPSTNLINL SPSFQDRHFM LNKSPSSSLL FTSPPPYVNP APHPSTAAAL SATALLQKAT ALSSGPFGGG GQTRSVGHHR
301: PLTRVNELLG ADRVMMTSSS SSEYDQLVVD GLTSTWQNAD HLTRDFLGLT GHGVHVSVTP GDLLEYAGGV SFPMSTYLTE SHDHESSSSF QKAYDLGFTG
401: PHNM
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPD TNCVHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KVCGTREYRC DCGTLFSRKD
201: SFITHRAFCD ALAEESARII SIPSTNLINL SPSFQDRHFM LNKSPSSSLL FTSPPPYVNP APHPSTAAAL SATALLQKAT ALSSGPFGGG GQTRSVGHHR
301: PLTRVNELLG ADRVMMTSSS SSEYDQLVVD GLTSTWQNAD HLTRDFLGLT GHGVHVSVTP GDLLEYAGGV SFPMSTYLTE SHDHESSSSF QKAYDLGFTG
401: PHNM
001: MDMFSSHSLS YKLSSLSTEA SASSGNNTLS TIQEFSGFHN VISSVCTHTE THKPKKKRGL PGNPDPDAEV IALSPKTLLA TNRFVCEICN KGFQRDQNLQ
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPE TNCAHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KICGTRDYRC DCGTLFSRKD
201: TFITHRAFCD ALAEESARLH STSSSNLTNP NPNFQGHHFM FNKSSSLLFT SSPLFIEPSL STAALSTPPT AALSATALLQ KATSLSSTTF GGGGQTRSIG
301: HHRHLTNVNE FLGVDRVMMT SASSSEYDQL VVDGFTSTWQ KADRLTRDFL GLTGHGGHVS VRPGDMLEYA GGVAFPMSAY DTESHDHSFQ KAYDHLGFSG
401: AHRM
101: LHRRGHNLPW KLKQKNTKEQ QKKKVYVCPE TNCAHHHPSR ALGDLTGIKK HFCRKHGEKK WKCEKCSKFY AVQSDWKAHT KICGTRDYRC DCGTLFSRKD
201: TFITHRAFCD ALAEESARLH STSSSNLTNP NPNFQGHHFM FNKSSSLLFT SSPLFIEPSL STAALSTPPT AALSATALLQ KATSLSSTTF GGGGQTRSIG
301: HHRHLTNVNE FLGVDRVMMT SASSSEYDQL VVDGFTSTWQ KADRLTRDFL GLTGHGGHVS VRPGDMLEYA GGVAFPMSAY DTESHDHSFQ KAYDHLGFSG
401: AHRM
Arabidopsis Description
AtIDD12Indeterminate(ID)-domain 12 [Source:UniProtKB/TrEMBL;Acc:A0A1P8B4I0]
SUBAcon: [nucleus,plastid]
SUBAcon: [nucleus,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.