Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY37489 | Canola | nucleus | 36.29 | 95.65 |
| Bra027394.1-P | Field mustard | nucleus | 98.76 | 94.85 |
| CDY55238 | Canola | nucleus | 92.37 | 92.18 |
| CDY51742 | Canola | nucleus | 87.01 | 87.19 |
| CDY04118 | Canola | nucleus | 20.62 | 84.03 |
| CDX82515 | Canola | nucleus | 75.05 | 82.54 |
| CDY09390 | Canola | nucleus | 20.21 | 82.35 |
| CDX75732 | Canola | nucleus | 73.81 | 80.81 |
| CDY70142 | Canola | nucleus | 29.9 | 79.67 |
| AT3G13810.2 | Thale cress | nucleus | 81.24 | 76.65 |
| CDY14910 | Canola | nucleus | 19.79 | 72.18 |
| CDY72283 | Canola | nucleus | 27.01 | 69.31 |
| CDY53540 | Canola | nucleus | 25.57 | 63.92 |
| CDY04117 | Canola | nucleus | 27.22 | 61.68 |
| CDY70938 | Canola | cytosol, nucleus | 31.75 | 56.41 |
| CDX97281 | Canola | nucleus, plastid | 35.67 | 44.94 |
| CDX96046 | Canola | nucleus | 20.82 | 43.35 |
| CDX91304 | Canola | nucleus, plastid | 36.08 | 43.32 |
| CDY24490 | Canola | nucleus | 37.11 | 41.38 |
| CDX77936 | Canola | nucleus | 37.11 | 41.28 |
| CDX89862 | Canola | nucleus | 39.38 | 39.79 |
| CDY18188 | Canola | nucleus | 39.18 | 39.67 |
| CDX94759 | Canola | nucleus | 37.94 | 39.66 |
| CDY32514 | Canola | nucleus | 39.79 | 39.39 |
| CDY22307 | Canola | nucleus | 37.53 | 39.22 |
| CDY67009 | Canola | nucleus | 37.94 | 38.66 |
| CDX86010 | Canola | nucleus | 35.05 | 37.95 |
| CDY11241 | Canola | nucleus | 39.18 | 37.77 |
| CDY53836 | Canola | nucleus | 35.26 | 37.75 |
| CDX80854 | Canola | nucleus | 39.18 | 37.62 |
| VIT_09s0002g02300.t01 | Wine grape | nucleus | 41.24 | 37.59 |
| CDX81372 | Canola | nucleus | 37.73 | 37.42 |
| CDY10404 | Canola | nucleus | 38.76 | 37.08 |
| CDY59418 | Canola | nucleus | 31.55 | 37.05 |
| CDY57128 | Canola | nucleus | 37.53 | 36.99 |
| CDY17615 | Canola | nucleus | 40.0 | 36.81 |
| CDY44344 | Canola | nucleus | 37.94 | 36.8 |
| CDY03081 | Canola | nucleus | 39.38 | 36.45 |
| CDX70328 | Canola | nucleus | 38.35 | 36.19 |
| CDY17440 | Canola | nucleus | 34.64 | 35.15 |
| CDY45271 | Canola | nucleus | 30.1 | 35.1 |
| CDY17614 | Canola | nucleus, plastid | 36.29 | 34.31 |
| CDY15814 | Canola | nucleus | 33.4 | 34.25 |
| CDX81653 | Canola | nucleus | 32.78 | 34.05 |
| CDY03080 | Canola | nucleus, plastid | 36.08 | 33.91 |
| CDY09391 | Canola | nucleus | 39.38 | 33.69 |
| CDY15811 | Canola | nucleus | 39.18 | 33.45 |
| CDY45270 | Canola | nucleus | 30.72 | 33.11 |
| CDY04204 | Canola | nucleus | 21.44 | 28.97 |
| CDX84974 | Canola | nucleus | 22.68 | 28.72 |
| CDY60366 | Canola | nucleus | 22.47 | 28.46 |
| CDY04203 | Canola | plastid | 22.27 | 28.05 |
| CDY67587 | Canola | cytosol, nucleus | 12.99 | 28.0 |
| CDY51986 | Canola | nucleus | 21.65 | 27.78 |
| CDY36123 | Canola | nucleus | 21.65 | 27.78 |
| CDY07400 | Canola | nucleus | 22.89 | 26.88 |
| CDY09400 | Canola | nucleus | 23.71 | 26.26 |
| CDY17620 | Canola | nucleus | 23.92 | 26.13 |
| CDY60095 | Canola | nucleus | 23.3 | 25.57 |
| CDY15800 | Canola | nucleus | 23.3 | 25.57 |
| CDY12268 | Canola | nucleus | 23.51 | 25.56 |
| CDY04102 | Canola | nucleus | 23.51 | 25.39 |
| CDY63960 | Canola | nucleus | 23.3 | 25.06 |
| CDY68983 | Canola | nucleus | 18.97 | 23.53 |
Protein Annotations
| EnsemblPlants:CDX97521 | EnsemblPlantsGene:GSBRNA2T00104728001 | Gene3D:3.30.160.60 | GO:A0A078E8M7 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | InterPro:IPR013087 | InterPro:Znf_C2H2_sf | InterPro:Znf_C2H2_type | PANTHER:PTHR10593 | PANTHER:PTHR10593:SF49 |
| PFscan:PS50157 | ProteinID:CDX97521 | ProteinID:CDX97521.1 | ScanProsite:PS00028 | SEG:seg | SMART:SM00355 |
| SUPFAM:SSF57667 | UniParc:UPI0004EE19C6 | MapMan:15.5.15 | : | : | : |
Description
BnaA05g25580D
Coordinates
chrLK031900:+:104162..106558
Molecular Weight (calculated)
53630.3 Da
IEP (calculated)
8.333
GRAVY (calculated)
-0.891
Length
485 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSKDMLLHQ QVQQQQEENM SNLTSSGDQA SVSSGNRTEA SGSNFFHHQQ QQEEQQQFFV PEPQPQKKRR NQPGNPDPES EVIALSPKTL MATNRFVCEI
101: CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY
201: KCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNQQQTGDQI INYHHHGVPP
301: WLAPQPQDLT SSNPNPSNGG GGGGGGGLFS LAASPAMSAT ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA
401: SGFNHHHGGG EAFDNTFSGL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI LSFAGLGNCI NDAASDQLHP KPWQG
101: CNKGFQRDQN LQLHRRGHNL PWKLKQRSNK EVIRKKVYVC PETSCVHHDP SRALGDLTGI KKHFSRKHGE KKWKCDKCSK KYAVQSDCKA HSKTCGTKEY
201: KCDCGTLFSR RDSYITHRAF CLALAEETAR EVVTPQDQNH QPNPLMIHQS SHHHHQAQPN MNISSSSSSS HNIINTLHFE TNQQQTGDQI INYHHHGVPP
301: WLAPQPQDLT SSNPNPSNGG GGGGGGGLFS LAASPAMSAT ALLQKAAQMG STRTTPLPPT TDFERSHNTL TTTMASMMTS PSGFISSNNN NQVLFQDYNA
401: SGFNHHHGGG EAFDNTFSGL FRTNADTTSD KNKSGEGGGG REGLTRDFLG LRPLMSHNEI LSFAGLGNCI NDAASDQLHP KPWQG
001: MMNKDMLLHQ HQQPQQDENM SNLTSASGDQ ASVSSGNITE ASGSNYFPHH QQQQEQQQQQ LVVPDSQTQK KRRNQPGNPD PESEVIALSP KTLMATNRFV
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
101: CEICNKGFQR DQNLQLHRRG HNLPWKLKQR SNKEVIRKKV YVCPEASCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD CKAHSKTCGT
201: KEYRCDCGTL FSRRDSFITH RAFCEALAEE TAREVVIPQN QNNNQPNPLL IHQSASHPHH HHQTQPTINV SSSSSSSHNH NIINSLHFDT NNGNTNNSNN
301: SNNHLHTFPM KKEQQSNDHI MNYHHSIIPP WLAPQPHALT SSNPNPSNGG GGGGSLFSLA SPAMSATALL QKAAQMGSTK TPPLPPTTAY ERSTHNNNLT
401: TTMAAMMTSP SGFISSNNNN HVLFQDYNAS GFDNHGREEA FDDTFGGFLR TNEVTAAAGS EKSTKSGGGE GLTRDFLGLR PLMSHNEILS FAGLGSCINS
501: SASDQLHPKP WQG
Arabidopsis Description
AtIDD11indeterminate(ID)-domain 11 [Source:TAIR;Acc:AT3G13810]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.