CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68150	Soybean	nucleus	79.25	93.6
KRH71547	Soybean	nucleus	56.26	69.2
VIT_07s0104g01620.t01	Wine grape	nucleus	65.61	58.7
Solyc09g074780.2.1	Tomato	nucleus, plastid	56.45	58.08
KRH67268	Soybean	nucleus	28.22	57.85
PGSC0003DMT400029550	Potato	nucleus	48.6	57.4
KRG89168	Soybean	nucleus, plastid	29.35	45.11
GSMUA_Achr8P10040_001	Banana	nucleus	37.01	44.3
KRH15560	Soybean	nucleus	30.84	40.44
KRG95590	Soybean	nucleus	34.77	40.43
KRH68532	Soybean	nucleus	38.69	40.43
KRG92880	Soybean	nucleus	39.63	40.08
KRH67672	Soybean	nucleus	38.32	39.88
KRH51873	Soybean	nucleus	34.95	39.87
KRG96824	Soybean	nucleus	37.76	39.84
KRG95964	Soybean	nucleus	37.94	39.8
KRH71370	Soybean	nucleus	34.02	39.74
KRH22332	Soybean	nucleus	35.14	39.66
KRH33908	Soybean	nucleus, plastid	39.44	39.51
GSMUA_Achr11P...	Banana	nucleus	30.47	39.37
KRH61193	Soybean	nucleus	34.77	39.32
KRH32064	Soybean	nucleus	34.02	39.31
KRH25657	Soybean	nucleus	34.58	39.28
KRH76829	Soybean	nucleus	37.76	39.07
KRH05443	Soybean	nucleus	31.96	38.86
KRH55868	Soybean	nucleus	34.39	38.82
KRH26995	Soybean	nucleus	34.39	38.33
KRH08298	Soybean	nucleus	36.45	38.16
KRH10015	Soybean	nucleus	33.83	38.11
KRH19850	Soybean	nucleus	37.38	38.1
KRH49655	Soybean	nucleus	25.42	37.57
KRH23306	Soybean	nucleus	33.64	37.5
KRH32442	Soybean	nucleus	37.01	37.22
KRH47108	Soybean	nucleus	34.58	37.15
Os01t0935000-01	Rice	nucleus	32.9	36.97
KRH69941	Soybean	nucleus, plastid	36.07	36.76
KRH69942	Soybean	nucleus	36.07	36.76
EES04172	Sorghum	nucleus	35.51	36.54
Zm00001d042202_P001	Maize	nucleus	35.14	35.81
KRH49485	Soybean	nucleus	35.51	34.99
KRH44134	Soybean	nucleus	34.58	34.91
TraesCS3B01G497200.1	Wheat	nucleus	33.27	34.83
KRG89167	Soybean	nucleus, plastid	35.7	34.79
TraesCS3D01G449900.1	Wheat	nucleus	33.08	34.77
KRH49489	Soybean	nucleus, plastid	34.21	34.33
KRG90705	Soybean	nucleus	36.26	34.22
KRH36039	Soybean	nucleus	35.89	33.63
KRH24905	Soybean	nucleus	33.46	33.09
KRH26399	Soybean	nucleus	30.84	33.0
KRG89014	Soybean	nucleus	35.14	32.75
KRH22919	Soybean	nucleus	31.03	32.61
KRH34792	Soybean	nucleus	33.46	32.25
KRG91985	Soybean	nucleus	33.08	31.61
KRH41885	Soybean	nucleus	22.43	31.58
KRH60588	Soybean	nucleus	23.18	31.0
KRH58582	Soybean	nucleus	22.8	27.73
KRH42485	Soybean	nucleus	22.24	26.33
KRH38986	Soybean	nucleus	22.43	25.32
KRH48724	Soybean	nucleus	22.24	24.64

Protein Annotations

EMBL:ACUP02012154	EnsemblPlants:KRG96409	EnsemblPlantsGene:GLYMA_19G208900	Gene3D:3.30.160.60	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR013087	InterPro:Znf_C2H2_sf	InterPro:Znf_C2H2_type	PANTHER:PTHR10593	PANTHER:PTHR10593:SF34
PFAM:PF00096	PFscan:PS50157	ProteinID:KRG96409	ProteinID:KRG96409.1	ScanProsite:PS00028	SEG:seg
SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002949DDD	UniProt:K7MZH6	MapMan:15.5.15	:

Description

hypothetical protein

Coordinates

chr19:-:46374113..46377153

Molecular Weight (calculated)

58399.2 Da

IEP (calculated)

7.825

GRAVY (calculated)

-0.731

Length

535 amino acids

Sequence
(BLAST)

001: MSNISGDEGS FSSGNNGEEV HQESQQQHLQ SQLHDSSSGP SGACNSNASS NQQQTKKKRN LPGTPDPNAE VVALSPTTLM ATNRFVCEIC NKGFQRDQNL
101: QLHRRGHNLP WKLRQRTSTE VKKRVYVCPE PSCVHHNPAR ALGDLTGIKK HYSRKHGEKK WKCDKCSKRY AVQSDWKAHQ KTCGTREYKC DCGTIFSRRD
201: SFITHRAFCD ALTEENNRVN NQGLTSGMPP NLQSQIPDLM STMPLTTSPN TASKFGEYDP KNPLKSLAQE LVPIPFKFMS MGGGMFSTNA GALFGGPKTM
301: SPSSSSLQLG SSTSSSFNYL QDSENGGLIA ASAQMSATAL LQKAAQMGAT ASNSINSPMM QKGFVSGTTT GPDHVSSTTR PPYSGAMLQH NNSYDHFSPQ
401: PDLSSMAEVS GGGAFINQLF HKGQEISQVF DTNNPGSAMN DVGMFGQMPM GRDHHNQGLM KSVEQEVSNS SSLMHGRDVN DGNHPMQPST RFGGSDMTTV
501: HDFLGIGGST SRVMNHFHHH FPHEDSTIEE PMWDV

Best Arabidopsis Sequence Match ( AT1G03840.1 )
(BLAST)

001: MTTEDQTISS SGGYVQSSST TDHVDHHHHD QHESLNPPLV KKKRNLPGNP DPEAEVIALS PKTLMATNRF LCEICGKGFQ RDQNLQLHRR GHNLPWKLKQ
101: RTSKEVRKRV YVCPEKSCVH HHPTRALGDL TGIKKHFCRK HGEKKWKCEK CAKRYAVQSD WKAHSKTCGT REYRCDCGTI FSRRDSFITH RAFCDALAEE
201: TARLNAASHL KSFAATAGSN LNYHYLMGTL IPSPSLPQPP SFPFGPPQPQ HHHHHQFPIT TNNFDHQDVM KPASTLSLWS GGNINHHQQV TIEDRMAPQP
301: HSPQEDYNWV FGNANNHGEL ITTSDSLITH DNNINIVQSK ENANGATSLS VPSLFSSVDQ ITQDANAASV AVANMSATAL LQKAAQMGAT SSTSPTTTIT
401: TDQSAYLQSF ASKSNQIVED GGSDRFFASF GSNSVELMSN NNNGLHEIGN PRNGVTVVSG MGELQNYPWK RRRVDIGNAG GGGQTRDFLG VGVQTICHSS
501: SINGWI

Arabidopsis Description

MGPUncharacterized protein At1g03840 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SUS5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.