CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69942	Soybean	nucleus	100.0	100.0
KRH08298	Soybean	nucleus	88.38	90.8
KRH76829	Soybean	nucleus	74.67	75.82
VIT_04s0023g01430.t01	Wine grape	nucleus	67.24	69.76
AT3G50700.1	Thale cress	nucleus	51.62	59.96
CDX77936	Canola	nucleus	48.57	58.49
Bra036098.1-P	Field mustard	nucleus, plastid	48.38	58.26
CDY24490	Canola	nucleus	48.19	58.16
KRH67268	Soybean	nucleus	28.57	57.47
AT5G66730.1	Thale cress	nucleus	53.9	56.6
PGSC0003DMT400033039	Potato	nucleus, plastid	56.19	56.19
CDY67009	Canola	nucleus	50.67	55.88
CDX81372	Canola	nucleus	49.9	53.58
Bra037151.1-P	Field mustard	nucleus	49.9	53.25
CDY57128	Canola	nucleus	49.71	53.05
GSMUA_Achr4P14030_001	Banana	nucleus	50.67	48.99
GSMUA_Achr7P25960_001	Banana	nucleus	53.14	47.13
GSMUA_Achr3P29940_001	Banana	nucleus	51.43	46.47
KRH51873	Soybean	nucleus	41.14	46.06
KRH61193	Soybean	nucleus	40.95	45.45
Solyc02g062940.2.1	Tomato	nucleus	56.57	45.27
Zm00001d028139_P001	Maize	nucleus	46.1	44.9
KRH15560	Soybean	nucleus	34.67	44.61
EER95332	Sorghum	nucleus	44.57	44.57
TraesCS4A01G041400.1	Wheat	nucleus	40.95	44.15
TraesCS4D01G262500.1	Wheat	nucleus	43.81	43.73
GSMUA_Achr4P07200_001	Banana	nucleus	44.95	43.7
KRH05443	Soybean	nucleus	36.57	43.64
TraesCS4B01G262400.1	Wheat	nucleus	43.81	43.56
KRG89168	Soybean	nucleus, plastid	28.38	42.82
Os03t0197800-00	Rice	nucleus	44.76	42.57
HORVU4Hr1G070950.8	Barley	nucleus	43.24	42.35
KRH10015	Soybean	nucleus	37.9	41.89
KRH22332	Soybean	nucleus	37.14	41.14
KRH23306	Soybean	nucleus	37.52	41.04
KRH47108	Soybean	nucleus	38.67	40.76
KRG95590	Soybean	nucleus	35.43	40.43
KRH71370	Soybean	nucleus	35.05	40.17
KRH25657	Soybean	nucleus	36.0	40.13
PGSC0003DMT400040064	Potato	nucleus	56.19	40.08
KRH32064	Soybean	nucleus	35.24	39.96
KRH26995	Soybean	nucleus	36.38	39.79
KRH55868	Soybean	nucleus	35.81	39.66
KRH49655	Soybean	nucleus	27.05	39.23
KRH44134	Soybean	nucleus	38.67	38.3
KRG92880	Soybean	nucleus	38.1	37.81
KRH68532	Soybean	nucleus	36.38	37.3
KRG96824	Soybean	nucleus	36.0	37.28
KRH33908	Soybean	nucleus, plastid	37.9	37.27
KRH19850	Soybean	nucleus	37.14	37.14
KRH68150	Soybean	nucleus	31.81	36.87
KRH32442	Soybean	nucleus	37.33	36.84
KRG90705	Soybean	nucleus	39.62	36.68
KRG95964	Soybean	nucleus	35.43	36.47
KRH71547	Soybean	nucleus	30.1	36.32
KRH67672	Soybean	nucleus	35.43	36.19
KRH36039	Soybean	nucleus	39.24	36.08
KRG96409	Soybean	nucleus	36.76	36.07
KRG91985	Soybean	nucleus	37.33	35.0
KRH24905	Soybean	nucleus	36.0	34.94
KRH34792	Soybean	nucleus	36.76	34.77
KRH49489	Soybean	nucleus, plastid	35.24	34.71
KRH26399	Soybean	nucleus	32.95	34.6
KRH41885	Soybean	nucleus	24.76	34.21
KRG89014	Soybean	nucleus	37.33	34.15
KRH22919	Soybean	nucleus	32.95	33.99
KRH49485	Soybean	nucleus	34.86	33.7
KRG89167	Soybean	nucleus, plastid	34.86	33.33
KRH60588	Soybean	nucleus	25.14	33.0
KRH58582	Soybean	nucleus	25.71	30.68
KRH38986	Soybean	nucleus	27.05	29.96
KRH42485	Soybean	nucleus	25.71	29.87
KRH48724	Soybean	nucleus	26.48	28.78

Protein Annotations

EntrezGene:100814444	EntrezGene:100818698	MapMan:15.5.15	Gene3D:3.30.160.60	EMBL:ACUP02000739	EnsemblPlantsGene:GLYMA_02G058400
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:K7K6N3	EnsemblPlants:KRH69941
ProteinID:KRH69941	ProteinID:KRH69941.1	ProteinID:KRH69942.1	PFAM:PF00096	ScanProsite:PS00028	PFscan:PS50157
PANTHER:PTHR10593	PANTHER:PTHR10593:SF20	SMART:SM00355	SUPFAM:SSF57667	UniParc:UPI0002336BB3	InterPro:Znf_C2H2_sf
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5232153..5235699

Molecular Weight (calculated)

54444.8 Da

IEP (calculated)

7.888

GRAVY (calculated)

-0.313

Length

525 amino acids

Sequence
(BLAST)

001: MTVDLDNAST ASGEAASVSS SGNQTKPAAP KKKRNLPGMP DPEAEVIALS PKTLLATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV
101: YVCPEPTCVH HDPSRALGDL TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH RAFCDALAEE NARSHTVVKD
201: ISENDSKVLI GDSPPPQPVA ATVAATTAAA TTTTTTTTIT STTQANSVMS SCLQTHNLDL PENNPPQVIE EPQAATATAI SGSCGSSSSC STSNGGATCN
301: SNSSSSVFAS LFASSTASVT LQSQTPAFSD LIRAMGPPEH PADQISGPSS EAISLCLSTT SASPIFATGG RQYASSSPHP AMSATALLQK AAQMGAAATN
401: ASLLRGLGIV SSSPLDSTSS GQQNVLQWGH QQQLEPESGS VAAAGLGLGL PCEDGGSGLK ELMMGTSSMF GPKHTTLDFL GLGMAAGGTA GGGLSALITS
501: IGGGLDVTAA FGNGDFSGKD IGSSS

Best Arabidopsis Sequence Match ( AT5G66730.1 )
(BLAST)

001: MPVDLDNSST VSGDASVSST GNQNLTPKSV GKKKRNLPGM PDPDAEVIAL SPKTLMATNR FVCEICNKGF QRDQNLQLHR RGHNLPWKLR QRSTKEVRKK
101: VYVCPVSGCV HHDPSRALGD LTGIKKHFCR KHGEKKWKCE KCSKKYAVQS DWKAHSKICG TKEYKCDCGT LFSRRDSFIT HRAFCDALAE ESAKNHTQSK
201: KLYPETVTRK NPEIEQKSPA AVESSPSLPP SSPPSVAIAP APAISVETES VKIISSSVLP IQNSPESQEN NNHPEVIIEE ASRTIGFNVS SSDLSNDHSN
301: NNGGYAGLFV SSTASPSLYA SSTASPSLFA PSSSMEPISL CLSTNPSLFG PTIRDPPHFL TPLPPQPAMS ATALLQKAAQ MGSTGSGGSL LRGLGIVSTT
401: SSSMELSNHD ALSLAPGLGL GLPCSSGGSG SGLKELMMGN SSVFGPKQTT LDFLGLGRAV GNGGNTGGGL SALLTSIGGG GGIDLFGSGE FSGKDIGRSS

Arabidopsis Description

IDD1IDD1 [Source:UniProtKB/TrEMBL;Acc:A0A178UMT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.