CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 2
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER97442
EES02157
EES14166
KXG21076
KXG22896
KXG26019
KXG36498
OQU82754
OQU83580

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37650.1	EER97442	AT1G03840.1	17785527
AT4G37650.1	EES02157	AT1G03840.1	17785527
AT4G37650.1	EES14166	AT3G12280.1	22921914
AT4G37650.1	KXG21076	AT3G12280.1	22921914
AT4G37650.1	KXG26019	AT3G12280.1	22921914
AT4G37650.1	OQU83580	AT3G12280.1	22921914
AT4G37650.1	KXG22896	AT3G54220.1	17446396
AT4G37650.1	OQU82754	AT3G54220.1	17446396
AT4G37650.1	KXG22896	AT3G54220.1	17785527
AT4G37650.1	OQU82754	AT3G54220.1	17785527
AT4G37650.1	KXG22896	AT3G54220.1	18500650
AT4G37650.1	OQU82754	AT3G54220.1	18500650
AT4G37650.1	KXG22896	AT3G54220.1	22921914
AT4G37650.1	OQU82754	AT3G54220.1	22921914
AT4G37650.1	KXG36498	AT5G41920.1	18500650

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d029607_P001	Maize	plastid	67.47	71.11
OQU90176	Sorghum	nucleus, plastid	59.79	66.39
Os03t0433200-00	Rice	cytosol, mitochondrion, nucleus, plastid	57.38	63.18
GSMUA_Achr8P30950_001	Banana	mitochondrion	47.14	59.06
GSMUA_Achr1P22470_001	Banana	cytosol, mitochondrion, nucleus, plastid	46.39	57.89
GSMUA_Achr4P16460_001	Banana	nucleus	43.83	54.8
PGSC0003DMT400055239	Potato	nucleus	36.75	53.63
KRH77129	Soybean	plastid	37.05	51.68
KRH28353	Soybean	plastid	37.2	51.24
Bra010606.1-P	Field mustard	nucleus	35.09	49.79
VIT_07s0129g00030.t01	Wine grape	cytosol, plastid	36.75	49.39
CDY50264	Canola	nucleus, plastid	35.09	49.05
Solyc02g092370.1.1	Tomato	mitochondrion, nucleus	37.2	48.72
AT4G37650.1	Thale cress	cytosol, plastid	38.4	48.02
KRH58109	Soybean	cytosol, plastid	35.69	47.49
Bra017842.1-P	Field mustard	cytosol, plastid	37.95	47.37
Bra011777.1-P	Field mustard	cytosol, plastid	37.95	47.28
CDX72645	Canola	cytosol, plastid	37.8	47.18
KRH04424	Soybean	plastid	34.49	45.53
CDY44032	Canola	cytosol, plastid	35.54	44.95
EES18455	Sorghum	cytosol	22.14	34.67
EER97471	Sorghum	cytosol	20.33	29.67
KXG33889	Sorghum	cytosol	14.31	29.59
OQU92409	Sorghum	cytosol	19.73	23.6
EER97527	Sorghum	nucleus	17.62	21.27

Protein Annotations

MapMan:15.5.12	MapMan:26.3.1.4	EntrezGene:8066249	UniProt:C5WVK0	EnsemblPlants:EER94653	ProteinID:EER94653
ProteinID:EER94653.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007049	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356
GO:GO:0009058	GO:GO:0009956	GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366
GO:GO:0055072	InterPro:IPR005202	ProteinID:OQU92325.1	PFAM:PF03514	PFscan:PS50985	PANTHER:PTHR31636
PANTHER:PTHR31636:SF9	EnsemblPlantsGene:SORBI_3001G327900	InterPro:Short-root	InterPro:TF_GRAS	UniParc:UPI0001A83187	RefSeq:XP_002467655.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:61537676..61541705

Molecular Weight (calculated)

70401.5 Da

IEP (calculated)

6.538

GRAVY (calculated)

-0.443

Length

664 amino acids

Sequence
(BLAST)

001: MDTLFRLVSL HQHHQHQQAA AGAASSSPDQ HHHQSPYSSR STTSRSSTTS TGSRSSPSSY HTHNHHSNSH SHSHSYYSSS QAAGYYYDNP AGSGSGSGSG
101: GGGGGGSGGG YYYDHHHHHH QPAAAPYQEE CGNDHRFYMD EDFSSSSSSR HFQPRGAPPA QPPPSSSPAP TPPHQQPAST SSGAAAGGGG HLFEAADFSF
201: PQVDIDLDFS SPASSSGAGA AAASSSSGGG GAAGRWAAQL LLECARAVAA RDSQRVQQLM WMLNELASPY GDVDQKLASY FLQGLFARLT TSGPRTLRTL
301: AAASDRNTSF ESTRRTALRF QELSPWASFG HVAANGAILE AFLEASAAGA AAASSSTSSS SSQQQQPPRL HILDLSNTFC TQWPTLLEAL ATRSSDDTPH
401: LSITTVVPTA APGSAAAQRV MREIAQRLEK FARLMGVPFT FRAVHHAGDL AELDLDGLDL RREGEGGATT ALAINCVNAL RGVAPGGARR RDAFVASLRR
501: LEPRVVTVVE EDADLVAASD ESSSSSSAAA AEEAEAAFMK VFTEGLRFFS AYMDSLEESF PKASNERLAL ERAAGRAIVD LVSCPASESV ERRETGASWA
601: RRMRSAGFSP VAFSDDVADD MRSLLRRYRE GWTLREPGAD DGVAAGVFLA WKEQPVVWTS AWRP

Best Arabidopsis Sequence Match ( AT4G37650.1 )
(BLAST)

001: MDTLFRLVSL QQQQQSDSII TNQSSLSRTS TTTTGSPQTA YHYNFPQNDV VEECFNFFMD EEDLSSSSSH HNHHNHNNPN TYYSPFTTPT QYHPATSSTP
101: SSTAAAAALA SPYSSSGHHN DPSAFSIPQT PPSFDFSANA KWADSVLLEA ARAFSDKDTA RAQQILWTLN ELSSPYGDTE QKLASYFLQA LFNRMTGSGE
201: RCYRTMVTAA ATEKTCSFES TRKTVLKFQE VSPWATFGHV AANGAILEAV DGEAKIHIVD ISSTFCTQWP TLLEALATRS DDTPHLRLTT VVVANKFVND
301: QTASHRMMKE IGNRMEKFAR LMGVPFKFNI IHHVGDLSEF DLNELDVKPD EVLAINCVGA MHGIASRGSP RDAVISSFRR LRPRIVTVVE EEADLVGEEE
401: GGFDDEFLRG FGECLRWFRV CFESWEESFP RTSNERLMLE RAAGRAIVDL VACEPSDSTE RRETARKWSR RMRNSGFGAV GYSDEVADDV RALLRRYKEG
501: VWSMVQCPDA AGIFLCWRDQ PVVWASAWRP T

Arabidopsis Description

SHRSHR [Source:UniProtKB/TrEMBL;Acc:A0A178UYJ6]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.