CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022116_P001	Maize	nucleus	58.36	58.9
OQU92409	Sorghum	cytosol	47.09	46.67
PGSC0003DMT400036577	Potato	cytosol	10.18	43.08
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	33.82	41.61
VIT_09s0002g01190.t01	Wine grape	nucleus	38.36	38.72
Solyc03g123400.1.1	Tomato	extracellular, nucleus	36.0	36.53
PGSC0003DMT400089692	Potato	nucleus	35.09	35.61
AT3G13840.1	Thale cress	cytosol	32.0	34.51
KRH06192	Soybean	nucleus	33.09	33.52
KRH47610	Soybean	cytosol	32.73	33.21
CDX97537	Canola	cytosol	30.73	33.2
Bra027378.1-P	Field mustard	cytosol	30.73	33.14
EER97471	Sorghum	cytosol	20.36	24.62
EES18455	Sorghum	cytosol	18.18	23.58
KXG33889	Sorghum	cytosol	11.45	19.63
OQU90176	Sorghum	nucleus, plastid	20.0	18.39
EER94653	Sorghum	plastid	21.27	17.62

Protein Annotations

MapMan:15.5.12	MapMan:26.9.1.6.1	EntrezGene:8079178	UniProt:C5XDZ4	EnsemblPlants:EER97527	ProteinID:EER97527
ProteinID:EER97527.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009987	GO:GO:0043565	GO:GO:2000032	InterPro:IPR005202	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF40	InterPro:SCL29/NSP1	EnsemblPlantsGene:SORBI_3002G372100	InterPro:TF_GRAS	UniParc:UPI0001A838C3
RefSeq:XP_002461006.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:73049658..73053841

Molecular Weight (calculated)

58300.2 Da

IEP (calculated)

6.575

GRAVY (calculated)

-0.192

Length

550 amino acids

Sequence
(BLAST)

001: MNNEREEQEP AAATTSDWLD ESIAFLAANL DLGFNDYGLL STASEAQEQH DVGGMIVETL PPTATTLHQP SLNLDTSVAS SSPMTSQQEL GQPKKRKSPG
101: HSSSQRPHAG GGGRGGGQQE MGEASCVRSK PSKKVNGKGT AANSDREARW AEQLLNPCAA AIEAGNLPRT QHLLYVLGEL ASFSGEPNHR LAAHGLRALT
201: RRLPHAVGEA AAATVKMPSC ECPTPLFSGV DLRLFCASLI RFNEVSPWFA VPNALANSAI AHAASTKGAV TGPRQVHVVD MGVSHGVQWP TLLEALTRVP
301: RGSTPPSVRL TVAGPTATPP VPFSASPPGY DCSPQLLRYA KSIDLDLSIV QAPFLDTLHG TLTPGETLIV CLQFRLGHAT ADEQAVILRT VRDLNPELMV
401: LTELDVGGGR NVDSAASEFA ARLELLWRFL DSTAAAFKGM DADERRVMEV EAGTALAPTA RRGATVGGGR ESWRARLAAA GFEEAAFAGE AVETAKALLR
501: KYDSRWELVP PSPPAAAAVG LRWKGQPVSF CSLWRPAQAS PELMVMGRGA

Best Arabidopsis Sequence Match ( AT3G13840.1 )
(BLAST)

001: MLLEETEPPN QTLDHVLSWL EDSVSLSPLP GFDDSYLLHE FDGSQTWEWD QTQDPEHGFI QSYSQDLSAA YVGCEATNLE VVTEAPSIDL DLPPEIQQPN
101: DQSRKRSHDG FLEAQQVKKS ARSKRKAIKS SEKSSKDGNK EGRWAEKLLN PCALAITASN SSRVQHYLCV LSELASSSGD ANRRLAAFGL RALQHHLSSS
201: SVSSSFWPVF TFASAEVKMF QKTLLKFYEV SPWFALPNNM ANSAILQILA QDPKDKKDLH IIDIGVSHGM QWPTLLEALS CRLEGPPPRV RITVISDLTA
301: DIPFSVGPPG YNYGSQLLGF ARSLKINLQI SVLDKLQLID TSPHENLIVC AQFRLHHLKH SINDERGETL KAVRSLRPKG VVLCENNGEC SSSADFAAGF
401: SKKLEYVWKF LDSTSSGFKE ENSEERKLME GEATKVLMNA GDMNEGKEKW YERMREAGFF VEAFEEDAVD GAKSLLRKYD NNWEIRMEDG DTFAGLMWKG
501: EAVSFCSLWK

Arabidopsis Description

SCL29Scarecrow-like protein 29 [Source:UniProtKB/Swiss-Prot;Acc:Q9LRW3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.