CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23228	Soybean	cytosol	83.52	82.39
VIT_00s0226g00070.t01	Wine grape	plastid	68.65	68.81
GSMUA_Achr6P21350_001	Banana	cytosol	62.24	67.83
GSMUA_Achr9P02380_001	Banana	cytosol	61.78	66.01
PGSC0003DMT400037884	Potato	cytosol	63.16	65.87
Solyc08g014030.1.1	Tomato	cytosol	62.7	65.55
GSMUA_Achr10P...	Banana	cytosol	57.21	62.19
KRH28353	Soybean	plastid	51.03	46.27
KRH77129	Soybean	plastid	49.43	45.38
KRH58109	Soybean	cytosol, plastid	51.49	45.09
KRH04424	Soybean	plastid	50.8	44.14
KRH04459	Soybean	plastid	29.75	26.97
KRH26849	Soybean	cytosol	27.92	26.52
KRH22503	Soybean	cytosol	27.92	26.12
KRH58050	Soybean	cytosol	29.75	24.76
KRH47610	Soybean	cytosol	26.09	21.03
KRH06192	Soybean	nucleus	26.09	20.99

Protein Annotations

EntrezGene:100810808	MapMan:15.5.12	MapMan:26.3.1.4	EMBL:ACUP02009118	EnsemblPlantsGene:GLYMA_15G028600	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0007049
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008356	GO:GO:0009058	GO:GO:0009956
GO:GO:0009987	GO:GO:0043565	GO:GO:0045930	GO:GO:0048366	GO:GO:0055072	UniProt:I1MD47
InterPro:IPR005202	EnsemblPlants:KRH10104	ProteinID:KRH10104	ProteinID:KRH10104.1	PFAM:PF03514	PFscan:PS50985
PANTHER:PTHR31636	PANTHER:PTHR31636:SF36	InterPro:TF_GRAS	UniParc:UPI000233BE7C	SEG:seg	:

Description

hypothetical protein

Coordinates

chr15:+:2288636..2290699

Molecular Weight (calculated)

49375.3 Da

IEP (calculated)

5.093

GRAVY (calculated)

-0.384

Length

437 amino acids

Sequence
(BLAST)

001: MDISPYTTPK KLSPHSNNHN NIIADEAAAL LDHNNMHRSN HSHTSTSRSS DSSEPSEDGK WAPKLLRECA KAISERDSSK THHHLWMLNE LASPYGDCDQ
101: KLASYFLQAL FCRATESGER CYKTLSSVAE KNHSFDSAMR LILKFQEVSP WTTFGHVASN GAILEALEGE PKLHIIDLSN TLCTQWPTLL EALATRNDET
201: PHLKLTVVAI AGSVMKEIGQ RMEKFARLMG VPFEFNVISG LSQITKEGLG VQEDEAIAVN CVGTLRRVEI EERENLIRVF KSLGPKVVTV VEEEADFCSS
301: RENFVKCFEE CLKFYTLYFE MLEESFPPTS NERLMLEREC SRTIVRVLAC CGSGEFEDDG EFDCCERRER GIQWCERLRS AFSPSGFSDD VVDDVKALLK
401: RYQPGWSLVV SQGDEHLSGI YLTWKEEPVV WASAWKP

Best Arabidopsis Sequence Match ( AT2G04890.1 )
(BLAST)

001: MDNVRGSIML QPLPEIAESI DDAICHELSM WPDDAKDLLL IVEAISRGDL KLVLVACAKA VSENNLLMAR WCMGELRGMV SISGEPIQRL GAYMLEGLVA
101: RLAASGSSIY KSLQSREPES YEFLSYVYVL HEVCPYFKFG YMSANGAIAE AMKDEERIHI IDFQIGQGSQ WIALIQAFAA RPGGAPNIRI TGVGDGSVLV
201: TVKKRLEKLA KKFDVPFRFN AVSRPSCEVE VENLDVRDGE ALGVNFAYML HHLPDESVSM ENHRDRLLRM VKSLSPKVVT LVEQECNTNT SPFLPRFLET
301: LSYYTAMFES IDVMLPRNHK ERINIEQHCM ARDVVNIIAC EGAERIERHE LLGKWKSRFS MAGFEPYPLS SIISATIRAL LRDYSNGYAI EERDGALYLG
401: WMDRILVSSC AWK

Arabidopsis Description

SCL21SCL21 [Source:UniProtKB/TrEMBL;Acc:A0A178VWV4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.