Factsheet for PGSC0003DMT400067360

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g052960.1.1	Tomato	cytosol	90.16	89.74
VIT_12s0059g02770.t01	Wine grape	cytosol	70.73	67.87
GSMUA_Achr6P24300_001	Banana	cytosol, peroxisome, plastid	61.12	61.85
KRH26849	Soybean	cytosol	66.51	61.74
KRH22503	Soybean	cytosol	66.74	61.03
TraesCS1D01G319500.1	Wheat	cytosol	48.71	50.12
EES18455	Sorghum	cytosol	49.65	50.0
TraesCS1A01G319700.1	Wheat	cytosol	48.24	49.64
Zm00001d038609_P001	Maize	cytosol	49.41	49.53
TraesCS1B01G332000.1	Wheat	cytosol	47.78	49.16
HORVU1Hr1G066390.1	Barley	cytosol	47.54	48.92
Os05t0500600-01	Rice	cytosol	48.48	48.71
PGSC0003DMT400064187	Potato	plastid	47.78	46.58
KXG33889	Sorghum	cytosol	33.02	43.93
PGSC0003DMT400055239	Potato	nucleus	30.91	29.01
PGSC0003DMT400037884	Potato	cytosol	28.1	28.64
PGSC0003DMT400036577	Potato	cytosol	8.67	28.46
PGSC0003DMT400089692	Potato	nucleus	24.36	19.19

Protein Annotations

EnsemblPlants:PGSC0003DMT400067360	EnsemblPlantsGene:PGSC0003DMG400026191	EntrezGene:102604010	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF5	PFAM:PF03514	PFscan:PS50985	PGSC:PGSC0003DMG400026191	RefSeq:XP_006360550.1
SEG:seg	UniParc:UPI000296768F	UniProt:M1CH56	MapMan:15.5.12	:	:

Description

GRAS family transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400026191]

Coordinates

chr7:+:47586661..47588158

Molecular Weight (calculated)

48273.4 Da

IEP (calculated)

5.156

GRAVY (calculated)

-0.245

Length

427 amino acids

Sequence
(BLAST)

001: MNFTTIPLQN PSFFNNSQSS LAGALQGCIG NLDGACLEKL LLHCASALEN NDVTLAQQVM WVLNNLASSN GDPNQRLTSW FLRALISRAS RVCPNATNLH
101: GGSNLERRLM SVTELAGYVD LIPWHRFGFC ASNSVIYKAI EGQTKVHILD FSITHCMQWP TLIDAIAKRP EGPPSLRISV PSWRPQVPPL LNVSSEEVGQ
201: RLANFAKFRD VPFEFHVIED LNYDMFLSQL NPSTLQIRDD EALVVNCQNW LRYLHDDEQI KGAISSRDIF LDRVKDLNPC IVTIVDEDCD LGNSTTLTSR
301: IATCFNYLWI PFDALETFLP KDSKQRLDYE GDIGHKIENI IGFEGNQRIE RLESCNKFSQ RMENSGYMSV PFSEETIKEV KSLLDEHASG WGMKKEEHDM
401: LVLTWKGHNS VYATSWVIVP TTPYGHE

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.