Factsheet for Bra036041.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY30617	Canola	mitochondrion	99.76	99.76
AT3G49950.1	Thale cress	mitochondrion	80.62	82.2
PGSC0003DMT400064187	Potato	plastid	55.98	53.42
VIT_07s0129g00340.t01	Wine grape	plastid	58.13	53.41
Solyc02g092570.1.1	Tomato	plastid	55.02	52.51
GSMUA_Achr10P...	Banana	plastid	54.55	50.11
GSMUA_Achr6P16880_001	Banana	cytosol, plasma membrane, plastid	54.31	49.67
EER97471	Sorghum	cytosol	53.11	48.79
Zm00001d006744_P001	Maize	plastid	52.87	48.46
Zm00001d021998_P001	Maize	plastid	52.63	48.25
GSMUA_Achr6P07790_001	Banana	plastid	52.63	48.14
TraesCS2D01G193300.1	Wheat	plastid	51.91	47.28
KRH04459	Soybean	plastid	54.31	47.1
TraesCS2A01G194600.1	Wheat	plastid	51.44	46.84
HORVU2Hr1G035120.1	Barley	cytosol	51.2	46.72
Os07t0589200-00	Rice	cytosol	52.39	46.3
KRH58050	Soybean	cytosol	55.26	44.0
TraesCS2B01G212300.1	Wheat	endoplasmic reticulum, plasma membrane	51.2	42.38
Bra010606.1-P	Field mustard	nucleus	26.79	23.93
Bra017842.1-P	Field mustard	cytosol, plastid	28.23	22.18
Bra011777.1-P	Field mustard	cytosol, plastid	28.23	22.14
Bra027378.1-P	Field mustard	cytosol	26.32	21.57

Protein Annotations

EnsemblPlants:Bra036041.1	EnsemblPlants:Bra036041.1-P	EnsemblPlantsGene:Bra036041	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR005202	InterPro:TF_GRAS
PANTHER:PTHR31636	PANTHER:PTHR31636:SF51	PFAM:PF03514	PFscan:PS50985	SEG:seg	UniParc:UPI0002542B02
UniProt:M4F4P1	MapMan:15.5.12	:	:	:	:

Description

AT3G49950 (E=4e-185) | scarecrow transcription factor family protein

Coordinates

chrA09:+:24901253..24902509

Molecular Weight (calculated)

46876.1 Da

IEP (calculated)

5.430

GRAVY (calculated)

-0.062

Length

418 amino acids

Sequence
(BLAST)

001: MTRTGIISPT RFPSLKSQRC GSGGDASFME QLLLHCATAI DSNDAALAHQ LLWVLNNIAS PDGDSSTQRL TSAFVRALLS RAVSKIPTLF STFGNTVFQP
101: PADEIHRFSV VELAGFIDLT PWHRFGFIAA NEAILTAVEG YSTVHIVDLS LTHCMQIPTL IDAMATKLNK PPLLKLTVVS SASNFPPFIN ISYEDLGSKL
201: VNFATSRNIE MQFTIIPSTY SDGFSSLLQH LRMYPTSYNE ALVVNCHMML RYIPDETLTP SSPSSLSLRN VFLNQLRSLN PTMVTLIEED ADLTSENLVT
301: RLRSAFNYFW IPFDTTDTFM SEQRRLYEAE ISWKIENVVA KEGVERVERT ETKGRWLERM RDNDFGGVRV REEAVSDLKA MLGEHAVGWG MKKDDDDESL
401: VLTWKGHSVV FATVWVPM

Best Arabidopsis Sequence Match ( AT3G49950.1 )
(BLAST)

001: MTKTRILNPT RFPSPKPLRG CGDANFMEQL LLHCATAIDS NDAALTHQIL WVLNNIAPPD GDSTQRLTSA FLRALLSRAV SKTPTLSSTI SFLPQADELH
101: RFSVVELAAF VDLTPWHRFG FIAANAAILT AVEGYSTVHI VDLSLTHCMQ IPTLIDAMAS RLNKPPPLLK LTVVSSSDHF PPFINISYEE LGSKLVNFAT
201: TRNITMEFTI VPSTYSDGFS SLLQQLRIYP SSFNEALVVN CHMMLRYIPE EPLTSSSSSL RTVFLKQLRS LNPRIVTLIE EDVDLTSENL VNRLKSAFNY
301: FWIPFDTTDT FMSEQRRWYE AEISWKIENV VAKEGAERVE RTETKRRWIE RMREAEFGGV RVKEDAVADV KAMLEEHAVG WGMKKEDDDE SLVLTWKGHS
401: VVFATVWVPI

Arabidopsis Description

SCL32Scarecrow-like protein 32 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN22]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.