Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY63333 | Canola | cytosol | 98.6 | 98.6 |
| CDX89165 | Canola | cytosol | 93.02 | 92.5 |
| AT3G63010.1 | Thale cress | cytosol | 91.62 | 91.62 |
| CDX67913 | Canola | cytosol | 91.06 | 91.06 |
| CDY70667 | Canola | cytosol | 89.94 | 89.94 |
| CDX93945 | Canola | extracellular, golgi | 87.99 | 88.48 |
| VIT_07s0104g00930.t01 | Wine grape | cytosol | 76.54 | 79.65 |
| PGSC0003DMT400009831 | Potato | cytosol | 75.98 | 78.84 |
| Solyc06g008870.2.1 | Tomato | cytosol | 75.7 | 78.55 |
| PGSC0003DMT400056562 | Potato | cytosol | 75.42 | 78.26 |
| Solyc09g074270.2.1 | Tomato | cytosol | 73.74 | 76.52 |
| KRH71503 | Soybean | cytosol | 71.79 | 75.15 |
| KRH31953 | Soybean | cytosol | 70.67 | 73.76 |
| KRH67123 | Soybean | cytosol | 70.39 | 72.83 |
| CDX80665 | Canola | cytosol | 68.72 | 71.51 |
| CDY16687 | Canola | cytosol | 68.72 | 71.3 |
| GSMUA_Achr3P24930_001 | Banana | cytosol | 57.82 | 67.65 |
| GSMUA_Achr8P05910_001 | Banana | cytosol | 57.26 | 67.21 |
| GSMUA_Achr5P27430_001 | Banana | cytosol | 57.54 | 66.88 |
| CDY41936 | Canola | cytosol | 64.8 | 66.86 |
| GSMUA_Achr6P16090_001 | Banana | cytosol | 57.26 | 66.78 |
| CDY27795 | Canola | cytosol | 64.53 | 66.76 |
| GSMUA_Achr10P... | Banana | cytosol | 56.7 | 65.48 |
| GSMUA_Achr5P27450_001 | Banana | mitochondrion | 57.26 | 60.65 |
| Zm00001d010308_P001 | Maize | cytosol, plastid | 58.38 | 59.71 |
| Os05t0407500-01 | Rice | cytosol, nucleus | 58.94 | 59.6 |
| KXG21982 | Sorghum | cytosol | 58.94 | 59.44 |
| Zm00001d038165_P003 | Maize | cytosol | 58.1 | 59.26 |
| HORVU1Hr1G060810.1 | Barley | cytosol | 58.38 | 59.04 |
| TraesCS1B01G265900.1 | Wheat | cytosol | 58.38 | 58.87 |
| TraesCS1D01G254500.1 | Wheat | cytosol | 57.54 | 58.19 |
| TraesCS1A01G255100.1 | Wheat | cytosol | 57.54 | 58.03 |
| CDY16855 | Canola | cytosol | 36.59 | 39.1 |
| CDX88032 | Canola | cytosol | 36.03 | 38.51 |
| CDX80370 | Canola | cytosol | 35.75 | 38.21 |
| CDX87169 | Canola | cytosol | 35.75 | 38.21 |
| CDY55764 | Canola | cytosol | 21.23 | 32.48 |
| CDX98936 | Canola | cytosol | 29.61 | 31.93 |
| CDX70090 | Canola | cytosol | 29.61 | 31.93 |
| CDX87235 | Canola | cytosol, nucleus, plastid | 22.91 | 31.78 |
| CDX81008 | Canola | cytosol | 29.61 | 31.74 |
| CDY16790 | Canola | cytosol | 28.49 | 31.1 |
| CDX69476 | Canola | cytosol | 28.21 | 30.42 |
| CDY70129 | Canola | cytosol | 28.21 | 30.33 |
| CDX74751 | Canola | cytosol | 25.98 | 29.25 |
| CDY18915 | Canola | cytosol | 26.54 | 29.14 |
| CDY18914 | Canola | cytosol | 24.3 | 26.85 |
| CDX74752 | Canola | cytosol | 24.3 | 26.85 |
| CDY30708 | Canola | cytosol | 20.67 | 26.81 |
Protein Annotations
| MapMan:11.6.2.1 | Gene3D:3.40.50.1820 | GO:A0A078JIS8 | UniProt:A0A078JIS8 | InterPro:AB_hydrolase | InterPro:AB_hydrolase_3 |
| EnsemblPlants:CDY67478 | ProteinID:CDY67478 | ProteinID:CDY67478.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00063644001 | InterPro:IPR029058 | InterPro:Lipase_GDXG_HIS_AS | InterPro:Lipase_GDXG_put_SER_AS |
| PFAM:PF07859 | ScanProsite:PS01173 | ScanProsite:PS01174 | PANTHER:PTHR23024 | PANTHER:PTHR23024:SF353 | SUPFAM:SSF53474 |
| UniParc:UPI0004EE62B3 | : | : | : | : | : |
Description
BnaCnng55170DBnaCnng55170D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JIS8]
Coordinates
chrLK036147:+:8246..9710
Molecular Weight (calculated)
40141.6 Da
IEP (calculated)
6.699
GRAVY (calculated)
-0.212
Length
358 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YTLLRRPDGS FNRDLAEFLD RKVPANSFPV DGVFSFDHVD TSTSLLTRIY LPAPLDPSRH GSVDLTEPLS
101: TTDIVPVLVF FHGGSFTHSS ANSAIYDTFC RRLVTICGVV VVSVDYRRSP EHRYPCAYDD GWNALKWVKS RVWLQSGKDS NVYVYLAGDS SGGNIAHNVA
201: VRATSEGVKV LGNILLHPMF GGLERTQSEK RLDGKYFVTI QDRDWYWRAY LPEGEDRDHP ACNPFGPRGQ SLEGVNFPKS LVVVAGLDLV QDWQLAYVDG
301: LKKTGHHVNL LYLKQATIGF YFLPNNDHFH CLMDELTKFV HSVDEDTQSK SSPVLLTP
101: TTDIVPVLVF FHGGSFTHSS ANSAIYDTFC RRLVTICGVV VVSVDYRRSP EHRYPCAYDD GWNALKWVKS RVWLQSGKDS NVYVYLAGDS SGGNIAHNVA
201: VRATSEGVKV LGNILLHPMF GGLERTQSEK RLDGKYFVTI QDRDWYWRAY LPEGEDRDHP ACNPFGPRGQ SLEGVNFPKS LVVVAGLDLV QDWQLAYVDG
301: LKKTGHHVNL LYLKQATIGF YFLPNNDHFH CLMDELTKFV HSVDEDTQSK SSPVLLTP
001: MAGGNEVNLN ECKRIVPLNT WVLISNFKLA YKVLRRPDGS FNRDLAEFLD RKVPANSFPL DGVFSFDHVD STTNLLTRIY QPASLLHQTR HGTLELTKPL
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
101: STTEIVPVLI FFHGGSFTHS SANSAIYDTF CRRLVTICGV VVVSVDYRRS PEHRYPCAYD DGWNALNWVK SRVWLQSGKD SNVYVYLAGD SSGGNIAHNV
201: AVRATNEGVK VLGNILLHPM FGGQERTQSE KTLDGKYFVT IQDRDWYWRA YLPEGEDRDH PACNPFGPRG QSLKGVNFPK SLVVVAGLDL VQDWQLAYVD
301: GLKKTGLEVN LLYLKQATIG FYFLPNNDHF HCLMEELNKF VHSIEDSQSK SSPVLLTP
Arabidopsis Description
GID1BGibberellin receptor GID1B [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.