CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY03475
CDY04092
CDY17662
CDY34266
CDY36236
CDY43122
CDY50707
CDY55037
CDY64837
CDY70426

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G27320.1	CDY55037	AT1G66350.1	16709201
AT5G27320.1	CDY70426	AT1G66350.1	16709201
AT5G27320.1	CDY55037	AT1G66350.1	19500306
AT5G27320.1	CDY70426	AT1G66350.1	19500306
AT5G27320.1	CDY04092	AT2G01570.1	16709201
AT5G27320.1	CDY17662	AT2G01570.1	16709201
AT5G27320.1	CDY36236	AT2G01570.1	16709201
AT5G27320.1	CDY64837	AT2G01570.1	16709201
AT5G27320.1	CDY04092	AT2G01570.1	17194763
AT5G27320.1	CDY17662	AT2G01570.1	17194763
AT5G27320.1	CDY36236	AT2G01570.1	17194763
AT5G27320.1	CDY64837	AT2G01570.1	17194763
AT5G27320.1	CDY04092	AT2G01570.1	19500306
AT5G27320.1	CDY17662	AT2G01570.1	19500306
AT5G27320.1	CDY36236	AT2G01570.1	19500306
AT5G27320.1	CDY64837	AT2G01570.1	19500306
AT5G27320.1	CDY43122	AT3G03450.1	16709201
AT5G27320.1	CDY50707	AT3G03450.1	16709201
AT5G27320.1	CDY43122	AT3G03450.1	19500306
AT5G27320.1	CDY50707	AT3G03450.1	19500306
AT5G27320.1	CDY03475	AT4G24210.1	19500306
AT5G27320.1	CDY34266	AT4G24210.1	19500306

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009970.1-P	Field mustard	cytosol	98.84	98.55
CDY16687	Canola	cytosol	98.84	98.55
AT5G27320.1	Thale cress	cytosol	92.44	92.44
CDY41936	Canola	cytosol	80.52	79.83
CDY27795	Canola	cytosol	79.94	79.48
KRH33997	Soybean	cytosol	78.2	78.2
KRG92803	Soybean	cytosol	77.62	77.62
Solyc01g098390.2.1	Tomato	cytosol	76.16	75.07
PGSC0003DMT400073501	Potato	cytosol	75.87	75.0
VIT_14s0030g00440.t01	Wine grape	cytosol	80.23	73.21
GSMUA_Achr3P24930_001	Banana	cytosol	63.66	71.57
GSMUA_Achr5P27430_001	Banana	cytosol	61.92	69.16
CDY63333	Canola	cytosol	71.8	68.99
GSMUA_Achr8P05910_001	Banana	cytosol	61.05	68.85
CDY67478	Canola	cytosol	71.51	68.72
CDX67913	Canola	cytosol	71.51	68.72
GSMUA_Achr10P...	Banana	cytosol	61.92	68.71
CDX89165	Canola	cytosol	71.51	68.33
GSMUA_Achr6P16090_001	Banana	cytosol	60.76	68.08
CDY70667	Canola	cytosol	70.64	67.88
CDX93945	Canola	extracellular, golgi	69.19	66.85
GSMUA_Achr5P27450_001	Banana	mitochondrion	62.5	63.61
Os05t0407500-01	Rice	cytosol, nucleus	63.95	62.15
Zm00001d010308_P001	Maize	cytosol, plastid	62.79	61.71
KXG21982	Sorghum	cytosol	63.66	61.69
TraesCS1A01G255100.1	Wheat	cytosol	63.08	61.13
TraesCS1B01G265900.1	Wheat	cytosol	63.08	61.13
Zm00001d038165_P003	Maize	cytosol	62.21	60.97
HORVU1Hr1G060810.1	Barley	cytosol	62.5	60.73
TraesCS1D01G254500.1	Wheat	cytosol	61.92	60.17
CDX87169	Canola	cytosol	37.79	38.81
CDY16855	Canola	cytosol	37.79	38.81
CDX80370	Canola	cytosol	36.92	37.91
CDX88032	Canola	cytosol	36.92	37.91
CDX81008	Canola	cytosol	29.65	30.54
CDY55764	Canola	cytosol	20.64	30.34
CDX87235	Canola	cytosol, nucleus, plastid	22.67	30.23
CDX98936	Canola	cytosol	28.78	29.82
CDX70090	Canola	cytosol	28.78	29.82
CDY16790	Canola	cytosol	27.62	28.96
CDX69476	Canola	cytosol	27.91	28.92
CDY70129	Canola	cytosol	27.91	28.83
CDX74752	Canola	cytosol	25.87	27.47
CDY18915	Canola	cytosol	25.87	27.3
CDX74751	Canola	cytosol	25.0	27.04
CDY18914	Canola	cytosol	25.29	26.85
CDY30708	Canola	cytosol	21.51	26.81

Protein Annotations

MapMan:11.6.2.1	Gene3D:3.40.50.1820	GO:A0A078CV16	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	EnsemblPlants:CDX80665
ProteinID:CDX80665	ProteinID:CDX80665.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00133814001	InterPro:IPR029058	InterPro:Lipase_GDXG_HIS_AS	InterPro:Lipase_GDXG_put_SER_AS	PFAM:PF07859
ScanProsite:PS01173	ScanProsite:PS01174	PANTHER:PTHR23024	PANTHER:PTHR23024:SF227	SUPFAM:SSF53474	UniParc:UPI0004EEB97A
SEG:seg	:	:	:	:	:

Description

BnaC07g27790D

Coordinates

chrLK031821:-:1977208..1979508

Molecular Weight (calculated)

38328.7 Da

IEP (calculated)

7.564

GRAVY (calculated)

-0.155

Length

344 amino acids

Sequence
(BLAST)

001: MAGSDQVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVIM DRQTNLLSRV YRPAFAGDPP SFTDLQKPVD
101: GEVVPVIVFF HGGSFVHSSA NSAIYDTLCR RLVGLCGSVV VSVNYRRAPE NRYPCAYDDG WTALKWVNSR PWLQSKKDSK VHIFLAGDSS GGNIAHNVAV
201: RAVESGIGVL GNILLNPMFG GTARTESETR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPKSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KRAGQEVKLL YLDQATIGFY LLPNNNHFHT VMEEIAAFVN AECQ

Best Arabidopsis Sequence Match ( AT5G27320.1 )
(BLAST)

001: MAGSEEVNLI ESKTVVPLNT WVLISNFKLA YNLLRRPDGT FNRHLAEFLD RKVPANANPV NGVFSFDVII DRQTNLLSRV YRPADAGTSP SITDLQNPVD
101: GEIVPVIVFF HGGSFAHSSA NSAIYDTLCR RLVGLCGAVV VSVNYRRAPE NRYPCAYDDG WAVLKWVNSS SWLRSKKDSK VRIFLAGDSS GGNIVHNVAV
201: RAVESRIDVL GNILLNPMFG GTERTESEKR LDGKYFVTVR DRDWYWRAFL PEGEDREHPA CSPFGPRSKS LEGLSFPKSL VVVAGLDLIQ DWQLKYAEGL
301: KKAGQEVKLL YLEQATIGFY LLPNNNHFHT VMDEIAAFVN AECQ

Arabidopsis Description

GID1CGID1C [Source:UniProtKB/TrEMBL;Acc:A0A178UKX0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.