CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
plastid 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX79176
CDX91876
CDY07161
CDY07174
CDY48492
CDY48504
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G16080.1	CDY07161	AT4G00980.1	21798944
AT5G16080.1	CDY48492	AT4G00980.1	21798944
AT5G16080.1	CDX79176	AT4G01090.1	21798944
AT5G16080.1	CDX91876	AT4G01090.1	21798944
AT5G16080.1	CDY07174	AT4G01090.1	21798944
AT5G16080.1	CDY48504	AT4G01090.1	21798944
AT5G16080.1	CDY67475	AT4G01090.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008651.1-P	Field mustard	cytosol	100.0	100.0
CDY70129	Canola	cytosol	96.08	95.8
AT5G16080.1	Thale cress	cytosol	87.35	84.3
KRH01780	Soybean	cytosol	54.82	53.53
PGSC0003DMT400033010	Potato	cytosol	53.31	53.47
GSMUA_Achr6P16980_001	Banana	mitochondrion	46.99	52.7
GSMUA_Achr10P...	Banana	cytosol	46.69	52.54
VIT_14s0006g03180.t01	Wine grape	cytosol	53.92	52.34
KRH46912	Soybean	cytosol	55.42	50.83
Solyc02g085800.1.1	Tomato	cytosol	52.41	50.73
HORVU4Hr1G062060.1	Barley	mitochondrion	47.89	45.17
Os03t0258200-01	Rice	mitochondrion	49.4	44.69
EER95156	Sorghum	mitochondrion	49.7	44.35
TraesCS4D01G219100.1	Wheat	mitochondrion	47.89	44.29
TraesCS4B01G218900.1	Wheat	mitochondrion	47.59	44.13
TraesCS4A01G085300.1	Wheat	mitochondrion	47.29	43.61
Zm00001d047883_P001	Maize	mitochondrion	47.89	42.97
CDX87235	Canola	cytosol, nucleus, plastid	25.9	33.33
CDY16790	Canola	cytosol	32.23	32.62
CDX87169	Canola	cytosol	31.93	31.64
CDY30708	Canola	cytosol	26.2	31.52
CDY16855	Canola	cytosol	31.63	31.34
CDX88032	Canola	cytosol	31.63	31.34
CDY55764	Canola	cytosol	21.99	31.2
CDX80370	Canola	cytosol	31.33	31.04
CDX81008	Canola	cytosol	30.42	30.24
CDX74751	Canola	cytosol	28.92	30.19
CDX70090	Canola	cytosol	29.52	29.52
CDY18915	Canola	cytosol	28.92	29.45
CDX98936	Canola	cytosol	29.22	29.22
CDY63333	Canola	cytosol	30.72	28.49
CDY67478	Canola	cytosol	30.42	28.21
CDX89165	Canola	cytosol	30.42	28.06
CDX67913	Canola	cytosol	30.12	27.93
CDX80665	Canola	cytosol	28.92	27.91
CDY27795	Canola	cytosol	28.92	27.75
CDY16687	Canola	cytosol	28.61	27.54
CDX93945	Canola	extracellular, golgi	29.52	27.53
CDY41936	Canola	cytosol	28.61	27.38
CDY70667	Canola	cytosol	29.52	27.37
CDX74752	Canola	cytosol	26.51	27.16
CDY18914	Canola	cytosol	26.51	27.16

Protein Annotations

EnsemblPlants:CDX69476	EnsemblPlantsGene:GSBRNA2T00135466001	Gene3D:3.40.50.1820	GO:A0A078BXF7	GO:GO:0003674	GO:GO:0003824
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	InterPro:AB_hydrolase	InterPro:AB_hydrolase_3	InterPro:IPR029058
PANTHER:PTHR23024	PANTHER:PTHR23024:SF93	PFAM:PF07859	ProteinID:CDX69476	ProteinID:CDX69476.1	SUPFAM:SSF53474
UniParc:UPI0002544C2A	MapMan:35.1	:	:	:	:

Description

BnaA10g18250D

Coordinates

chrLK031790:+:402729..403727

Molecular Weight (calculated)

36644.9 Da

IEP (calculated)

8.738

GRAVY (calculated)

-0.135

Length

332 amino acids

Sequence
(BLAST)

001: MAALSFTHNH QSSDNRRGGS HNHRHGPIVE EIEGLIKVFN DGCVERPPIV PTVSATVHPS AKVTAFDIKL SNDTWARVYI PDAAAFSPSV TLPLLVYFHG
101: GGFCVGSAAW SCYHDFLTDL AVKARCVIVS VNYRLAPEHR LPAAYDDGIN VVSWLMKQGS NGGYSWVNKC DLSNVFLAGD SAGANVAYQV ALKITNTSNL
201: KGVILIHPFF GGEARTFSEK QQHSKSSALT LSASDTYWRL ALPRGVSRDH PWCNPPISSS ARLPTTMVFM AEFDILKDRN MEMCKMMRSH GKRVEGIIHG
301: GVGHAFHILD KSSVSRDRIH DMMCRLRNFI HP

Best Arabidopsis Sequence Match ( AT5G16080.1 )
(BLAST)

001: MATISFSHNH QSSDNRRGGS HHHRHGPVVE EIEGLIKVFN DGCVERPPIV PIVSPTIHPS SKATAFDIKL SNDTWTRVYI PDAAAASPSV TLPLLVYFHG
101: GGFCVGSAAW SCYHDFLTSL AVKARCVIVS VNYRLAPEHR LPAAYDDGVN VVSWLVKQQI STGGGYPSWL SKCNLSNVFL AGDSAGANIA YQVAVRIMAS
201: GKYANTLHLK GIILIHPFFG GESRTSSEKQ QHHTKSSALT LSASDAYWRL ALPRGASRDH PWCNPLMSSA GAKLPTTMVF MAEFDILKER NLEMCKVMRS
301: HGKRVEGIVH GGVGHAFHIL DNSSVSRDRI HDMMCRLHNF IHPS

Arabidopsis Description

CXE17Probable carboxylesterase 17 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFR7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.