Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d000165_P001 | Maize | mitochondrion | 56.77 | 52.21 |
| EES07408 | Sorghum | mitochondrion, plastid | 48.03 | 44.53 |
| Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 41.05 | 39.33 |
| KRH27180 | Soybean | plastid | 17.03 | 24.22 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 20.52 | 18.5 |
| Bra023170.1-P | Field mustard | nucleus | 22.27 | 18.41 |
| AT1G31240.1 | Thale cress | nucleus | 20.96 | 17.33 |
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 19.65 | 16.61 |
| Solyc02g069170.1.1 | Tomato | mitochondrion | 20.09 | 16.43 |
| KRH17259 | Soybean | plastid | 18.78 | 15.75 |
| KRH72903 | Soybean | cytosol | 19.21 | 15.17 |
| CDY02371 | Canola | cytosol | 15.72 | 15.06 |
| Zm00001d041766_P001 | Maize | cytosol | 24.02 | 14.86 |
| Zm00001d041530_P001 | Maize | cytosol | 23.14 | 14.85 |
Protein Annotations
| Gene3D:1.10.20.10 | MapMan:15.3.5.3.8 | UniProt:A0A1D6Q3M5 | ProteinID:AQK53163.1 | InterPro:BTP | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | InterPro:Histone-fold | InterPro:IPR009072 | PFAM:PF07524 |
| PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 | SMART:SM00576 | UniParc:UPI000842AF26 | EnsemblPlantsGene:Zm00001d050853 | EnsemblPlants:Zm00001d050853_P001 |
| EnsemblPlants:Zm00001d050853_T001 | SEG:seg | : | : | : | : |
Description
Bromodomain transcription factor
Coordinates
chr4:-:126985662..126989709
Molecular Weight (calculated)
24514.2 Da
IEP (calculated)
10.042
GRAVY (calculated)
-0.331
Length
229 amino acids
Sequence
(BLAST)
(BLAST)
001: MKQQIDLRRL DGVGLGESES GFGGRGRNGG APLRTPRTLQ HSRVDAWRRV GLELRPTDAK SLDRPPHRSK SLSSQTSLSH VVPPGLPSGT VVSLVRPAAL
101: RALSDIAGRY IASLGHTAAA FAEARGRTEP NVTDAVLALE DHALGGFPGA ADPTRPLLCS GALAELAQFV AAVREVPFPK PLPRRDPGCG SVDGWESFAA
201: AGRQPPLNHV PHWLPCFPEG WEERLRVRC
101: RALSDIAGRY IASLGHTAAA FAEARGRTEP NVTDAVLALE DHALGGFPGA ADPTRPLLCS GALAELAQFV AAVREVPFPK PLPRRDPGCG SVDGWESFAA
201: AGRQPPLNHV PHWLPCFPEG WEERLRVRC
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.