Factsheet for PGSC0003DMT400026858

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400011839
PGSC0003DMT400058477

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G31240.1	PGSC0003DMT400011839	AT1G50420.1	21798944
AT1G31240.1	PGSC0003DMT400058477	AT1G50420.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g069170.1.1	Tomato	mitochondrion	68.63	66.43
KRH27180	Soybean	plastid	18.82	31.68
VIT_01s0011g01670.t01	Wine grape	nucleus	29.15	31.1
Os02t0699900-01	Rice	cytosol, nucleus, plastid	25.83	29.29
KRH17259	Soybean	plastid	27.31	27.11
EES07408	Sorghum	mitochondrion, plastid	24.35	26.72
Bra023170.1-P	Field mustard	nucleus	27.31	26.71
AT1G31240.1	Thale cress	nucleus	25.83	25.27
Zm00001d000165_P001	Maize	mitochondrion	22.88	24.9
KRH72903	Soybean	cytosol	26.2	24.48
PGSC0003DMT400009911	Potato	nucleus	29.52	21.39
CDY02371	Canola	cytosol	18.82	21.34
Zm00001d050853_P001	Maize	cytosol	16.61	19.65

Protein Annotations

EnsemblPlants:PGSC0003DMT400026858	EnsemblPlantsGene:PGSC0003DMG400010364	EntrezGene:102579059	Gene3D:1.10.20.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046982	InterPro:BTP	InterPro:Histone-fold	InterPro:IPR009072	PANTHER:PTHR12321
PANTHER:PTHR12321:SF38	PFAM:PF07524	PGSC:PGSC0003DMG400010364	RefSeq:XP_006362608.1	SEG:seg	SMART:SM00576
UniParc:UPI000294D21D	UniProt:M1ANT1	MapMan:15.3.5.3.8	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010364]

Coordinates

chr2:-:28179976..28181348

Molecular Weight (calculated)

29787.6 Da

IEP (calculated)

9.870

GRAVY (calculated)

-0.515

Length

271 amino acids

Sequence
(BLAST)

001: MSSKSNRNRP LAAKAIPPPS TPLSESDYAF TITRTAVAQI CSSIGFTAAE APVLGILTDI AVRYLRTIAK SAADSANSAS RTQANLVDTI AAVDELSSVS
101: GFPGAWRATG CFLNSGAVKK LDTFTEDSKE IPFAKPLPRK IFSVGSRKGM RNVGSSKIEY IEGEKKHIPT WLPVMPVIEN HEKEIVEKRR RELWGYCAKT
201: EEPEREKKEE KKTDSGEKER KGLELPLKRG KVRFKIGGGV LGVCRSGGIG KRVLCENWNF DDENSSKQEQ L

Best Arabidopsis Sequence Match ( AT5G15570.1 )
(BLAST)

001: MINGGGEGGS QRRELQGKRS MSRGNDFAYA LARMATAQIC ESVEINSYQE SSQSREGLRF SSFQETALET LTDVVIQYIQ NIGKTAQFYV NMAGRVESNA
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K

Arabidopsis Description

Bromodomain transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LF25]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.