Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES07408 | Sorghum | mitochondrion, plastid | 75.9 | 76.52 |
| Zm00001d050853_P001 | Maize | cytosol | 52.21 | 56.77 |
| Os02t0699900-01 | Rice | cytosol, nucleus, plastid | 51.81 | 53.97 |
| KRH27180 | Soybean | plastid | 16.87 | 26.09 |
| VIT_01s0011g01670.t01 | Wine grape | nucleus | 24.1 | 23.62 |
| PGSC0003DMT400026858 | Potato | mitochondrion, nucleus | 24.9 | 22.88 |
| Solyc02g069170.1.1 | Tomato | mitochondrion | 24.1 | 21.43 |
| AT1G31240.1 | Thale cress | nucleus | 23.29 | 20.94 |
| Bra023170.1-P | Field mustard | nucleus | 22.89 | 20.58 |
| KRH17259 | Soybean | plastid | 22.49 | 20.51 |
| Zm00001d041530_P001 | Maize | cytosol | 28.11 | 19.61 |
| Zm00001d041766_P001 | Maize | cytosol | 27.31 | 18.38 |
| KRH72903 | Soybean | cytosol | 20.88 | 17.93 |
| CDY02371 | Canola | cytosol | 15.66 | 16.32 |
Protein Annotations
| EMBL:EU968479 | EnsemblPlants:Zm00001d000165_P001 | EnsemblPlants:Zm00001d000165_T001 | EnsemblPlantsGene:Zm00001d000165 | EntrezGene:100277408 | Gene3D:1.10.20.10 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold |
| InterPro:IPR009072 | PANTHER:PTHR12321 | PANTHER:PTHR12321:SF38 | PFAM:PF07524 | SEG:seg | SMART:SM00576 |
| UniParc:UPI000182DE6F | UniProt:B6TU14 | MapMan:15.3.5.3.8 | : | : | : |
Description
Bromodomain transcription factor
Coordinates
chrB73V4_ctg50:+:47321..48070
Molecular Weight (calculated)
26494.3 Da
IEP (calculated)
7.940
GRAVY (calculated)
-0.318
Length
249 amino acids
Sequence
(BLAST)
(BLAST)
001: MGTPAKHPRA VPRHLQAAIS TVSTAQILRS SGYSAAEPAA LRALSDIAGR YIASLGHAAA AFAEARGRTE PNVTDAVLAL EDHALGGFPG AADPTRPLLC
101: SGALAELAQF VAAVREVPFP KPLPRRDPGC GSVDGWESFA AAGRQPPLNH VPHWLPCFPE GWEERLRVRC QVAADDEKDT GQVVTVMDGN GKRGVPENRE
201: KLSFSLGQKR QRVKPSHKHG GAFERFTEQG ENSLSIECIS SASNLVIGP
101: SGALAELAQF VAAVREVPFP KPLPRRDPGC GSVDGWESFA AAGRQPPLNH VPHWLPCFPE GWEERLRVRC QVAADDEKDT GQVVTVMDGN GKRGVPENRE
201: KLSFSLGQKR QRVKPSHKHG GAFERFTEQG ENSLSIECIS SASNLVIGP
001: MKRRRRNSKL KFEETSDQSP TSTAEFSFSL TKIAVSQICQ SIGYKATDAS ALNTLTLTTT KFLQSLAELA SSFSNTANRT EVNLFDIVNG LQDIALSTSD
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
101: CFPGGSTVHD IESQCLIKSA VLRNLSDFVT YAPEIPFAKP LPRRERDGSF GGDLDHVAVT RSVDVTSVPA WLPPFPDSSL CSDRCSKDNR SDHLWENSDS
201: VIRREILPES LKSKSGGRLP VMRDKVRFKM EQRDWSSGGD TRLERSRDNN NGESGRDLEV KKKIREGYTY CAGEWPF
Arabidopsis Description
At1g31240 [Source:UniProtKB/TrEMBL;Acc:Q9SA19]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.