CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91978	Canola	cytosol, extracellular, nucleus	93.07	89.72
CDY60474	Canola	nucleus	64.27	63.93
CDY43254	Canola	nucleus	53.33	55.56
AT3G02160.1	Thale cress	cytosol	57.07	53.9
VIT_14s0068g00340.t01	Wine grape	nucleus	34.4	34.22
KRH01313	Soybean	cytosol	29.87	29.4
KRH45059	Soybean	cytosol	29.6	29.13
GSMUA_Achr11P...	Banana	nucleus	27.73	28.81
GSMUA_Achr9P26740_001	Banana	nucleus	24.53	28.13
TraesCS5A01G081700.1	Wheat	cytosol	25.33	26.24
EES15849	Sorghum	cytosol	26.13	26.06
TraesCS5B01G084700.1	Wheat	cytosol	25.07	25.97
Os12t0574800-02	Rice	nucleus	25.33	25.96
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	24.8	25.83
Zm00001d041530_P001	Maize	cytosol	24.27	25.49
EES17247	Sorghum	cytosol	24.8	25.27
GSMUA_Achr9P09310_001	Banana	nucleus	21.87	24.62
TraesCS7D01G036000.1	Wheat	mitochondrion	22.13	24.41
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	22.67	24.29
Zm00001d041766_P001	Maize	cytosol	23.73	24.05
CDY69783	Canola	nucleus	22.4	23.4
TraesCSU01G065200.1	Wheat	cytosol	22.13	23.38
CDX75423	Canola	nucleus	21.6	23.34
CDY02371	Canola	cytosol	14.4	22.59
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	22.93	21.88
Os03t0603300-01	Rice	cytosol, plastid	16.27	21.86

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlants:CDX74271	ProteinID:CDX74271	ProteinID:CDX74271.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00112058001	InterPro:Histone-fold
InterPro:IPR009072	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	InterPro:TAF8
UniParc:UPI0004EF1569	:	:	:	:	:

Description

BnaA03g27760D

Coordinates

chrLK031800:-:2019470..2020942

Molecular Weight (calculated)

40725.9 Da

IEP (calculated)

4.678

GRAVY (calculated)

-0.341

Length

375 amino acids

Sequence
(BLAST)

001: MVLHVMLGEL VSLNMSYGAG EGGISQSRES QGKREVFQGS DFAYVLARMA VAQICENVEV NVSQKGVRFS SFQESALDTL TCVAVQYIQS IGNSAQFYAN
101: VAGRVEGNSL DIVQALEDLG SGSGVSDVEC CLGDSGIVKD VIRYTGEVEE VPFVYALPRF PINKEKRGAP SFSEVGAEPP YEHIPVWLPA FPETNVGTIE
201: GNGPSLPSIQ HSFNGGGLEV LKSPKSARNS TQGEEEMEGN PFLAAPLRFV ENEVSPVVRL LELSNEVVGI NHVSDKHTSN NNSHIPVLEA STPCDDINRK
301: NKLSESEDGE KKGGARPQQT LLCFKIGTLK RPSCFAIKGS VQGRRWFQEG EVKREKKSET EENGERFDLG PDVVI

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.