Factsheet for AT3G02160.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039159.1-P	Field mustard	nucleus	58.19	61.27
CDY60474	Canola	nucleus	58.19	61.27
AT5G15570.1	Thale cress	nucleus	57.18	59.58
CDY43254	Canola	nucleus	53.9	59.44
CDX74271	Canola	cytosol	53.9	57.07
Bra001033.1-P	Field mustard	cytosol	54.16	56.88
CDX91978	Canola	cytosol, extracellular, nucleus	53.65	54.76
VIT_14s0068g00340.t01	Wine grape	nucleus	35.01	36.87
GSMUA_Achr11P...	Banana	nucleus	29.97	32.96
KRH45059	Soybean	cytosol	30.48	31.76
KRH01313	Soybean	cytosol	30.48	31.76
GSMUA_Achr9P26740_001	Banana	nucleus	24.18	29.36
Os12t0574800-02	Rice	nucleus	26.95	29.23
EES15849	Sorghum	cytosol	26.45	27.93
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	24.43	27.71
GSMUA_Achr9P09310_001	Banana	nucleus	23.17	27.63
Zm00001d041530_P001	Maize	cytosol	24.69	27.45
TraesCS7D01G036000.1	Wheat	mitochondrion	23.43	27.35
TraesCS5A01G081700.1	Wheat	cytosol	24.94	27.35
TraesCS5B01G084700.1	Wheat	cytosol	24.94	27.35
Zm00001d041766_P001	Maize	cytosol	25.44	27.3
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	24.69	27.22
EES17247	Sorghum	cytosol	25.19	27.17
Os03t0603300-01	Rice	cytosol, plastid	18.89	26.88
TraesCSU01G065200.1	Wheat	cytosol	23.43	26.2
AT4G34340.1	Thale cress	nucleus	22.42	25.21
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	23.68	23.92
AT1G31240.1	Thale cress	nucleus	16.37	23.47

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	EntrezGene:821295	ProteinID:AAF02121.1	ProteinID:AAF14822.1	ProteinID:AEE73771.1
EMBL:AK226400	ProteinID:ANM63626.1	ArrayExpress:AT3G02160	EnsemblPlantsGene:AT3G02160	RefSeq:AT3G02160	TAIR:AT3G02160
RefSeq:AT3G02160-TAIR-G	EnsemblPlants:AT3G02160.1	TAIR:AT3G02160.1	EMBL:BT015767	EMBL:BT020172	InterPro:BTP
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
RefSeq:NP_001325701.1	RefSeq:NP_186865.1	PFAM:PF07524	PO:PO:0000293	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53
UniProt:Q9S7R9	SMART:SM00576	InterPro:TAF8	UniParc:UPI00000A0836	:	:

Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]

Coordinates

chr3:+:394044..395994

Molecular Weight (calculated)

44074.0 Da

IEP (calculated)

5.152

GRAVY (calculated)

-0.465

Length

397 amino acids

Sequence
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.