Factsheet for Bra001033.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91978	Canola	cytosol, extracellular, nucleus	94.97	92.29
Bra039159.1-P	Field mustard	nucleus	63.76	63.93
AT3G02160.1	Thale cress	cytosol	56.88	54.16
Bra023525.1-P	Field mustard	cytosol	46.56	46.68
Bra008690.1-P	Field mustard	nucleus	44.18	46.13
VIT_14s0068g00340.t01	Wine grape	nucleus	34.39	34.48
KRH01313	Soybean	cytosol	30.69	30.45
KRH45059	Soybean	cytosol	30.42	30.18
GSMUA_Achr11P...	Banana	nucleus	27.78	29.09
GSMUA_Achr9P26740_001	Banana	nucleus	24.34	28.13
TraesCS5A01G081700.1	Wheat	cytosol	25.13	26.24
TraesCS5B01G084700.1	Wheat	cytosol	24.87	25.97
Os12t0574800-02	Rice	nucleus	25.13	25.96
EES15849	Sorghum	cytosol	25.66	25.8
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	24.34	25.56
Bra023170.1-P	Field mustard	nucleus	18.52	25.27
Zm00001d041530_P001	Maize	cytosol	23.81	25.21
EES17247	Sorghum	cytosol	24.34	25.0
GSMUA_Achr9P09310_001	Banana	nucleus	21.96	24.92
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	22.49	24.29
TraesCS7D01G036000.1	Wheat	mitochondrion	21.69	24.12
Zm00001d041766_P001	Maize	cytosol	23.28	23.78
Bra011521.1-P	Field mustard	nucleus	21.16	23.12
TraesCSU01G065200.1	Wheat	cytosol	21.69	23.1
Os03t0603300-01	Rice	cytosol, plastid	16.14	21.86
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	22.22	21.37

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlantsGene:Bra001033	EnsemblPlants:Bra001033.1	EnsemblPlants:Bra001033.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M4CA04	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	InterPro:TAF8
UniParc:UPI000254085F	:	:	:	:	:

Description

AT3G02160 (E=5e-082) | DNA binding

Coordinates

chrA03:+:14461788..14462924

Molecular Weight (calculated)

40888.2 Da

IEP (calculated)

4.992

GRAVY (calculated)

-0.353

Length

378 amino acids

Sequence
(BLAST)

001: MVLHVMLGEL VSLNMSNGVG EGGRSQSRES HGKRELFQGN DFAYVLARMA VAQICENVEV NVSQKGVRFS AFQESALDTL TGVAVQYIQS IGKSAQFYAN
101: VAGRVEGNSL DIVQALTDLG SGSGVSDVEC CLGDSGIVKD VIRYTGEAEE VPFVYALPRF PINKEKRGAP SFSEVGAEPP YEHIPVWLPA FPETNVGTIE
201: GNGPSLPSIQ HSFNGGGLEV LKSPKSARNS TQGEEEMEGN PFLAAPLRFV ENEVSPVVRL LELSNEVVGI SHVSDKHTSN NNSHIPVLEA STPCDDINNK
301: NKLSESEDGK KKGGARPQQT LLCFKIGTLK RPSCLAIKGS VQGRRWFQEG EVKREKKSET EENGERFDLA NLGPDVVI

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.