Factsheet for Bra039159.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60474	Canola	nucleus	97.08	97.08
Bra001033.1-P	Field mustard	cytosol	63.93	63.76
AT3G02160.1	Thale cress	cytosol	61.27	58.19
Bra023525.1-P	Field mustard	cytosol	50.13	50.13
Bra008690.1-P	Field mustard	nucleus	47.75	49.72
VIT_14s0068g00340.t01	Wine grape	nucleus	36.6	36.6
KRH01313	Soybean	cytosol	32.1	31.76
KRH45059	Soybean	cytosol	31.83	31.5
GSMUA_Achr11P...	Banana	nucleus	29.71	31.02
Os12t0574800-02	Rice	nucleus	27.85	28.69
TraesCS7D01G036000.1	Wheat	mitochondrion	25.73	28.53
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	25.73	27.71
TraesCS5B01G084700.1	Wheat	cytosol	26.26	27.35
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	25.99	27.22
TraesCS5A01G081700.1	Wheat	cytosol	25.99	27.07
EES17247	Sorghum	cytosol	26.26	26.9
Zm00001d041530_P001	Maize	cytosol	25.46	26.89
EES15849	Sorghum	cytosol	26.53	26.6
TraesCSU01G065200.1	Wheat	cytosol	24.93	26.48
GSMUA_Achr9P26740_001	Banana	nucleus	22.81	26.3
Os03t0603300-01	Rice	cytosol, plastid	18.83	25.45
Zm00001d041766_P001	Maize	cytosol	24.93	25.41
Bra011521.1-P	Field mustard	nucleus	22.55	24.57
GSMUA_Achr9P09310_001	Banana	nucleus	21.49	24.32
Bra023170.1-P	Field mustard	nucleus	17.77	24.19
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	24.67	23.66

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	InterPro:BTP	EnsemblPlantsGene:Bra039159	EnsemblPlants:Bra039159.1	EnsemblPlants:Bra039159.1-P
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	InterPro:Histone-fold	InterPro:IPR009072
UniProt:M4FDI8	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576	InterPro:TAF8
UniParc:UPI0002547652	:	:	:	:	:

Description

AT3G02160 (E=5e-143) | DNA binding

Coordinates

chrA05:-:23706401..23707534

Molecular Weight (calculated)

41081.2 Da

IEP (calculated)

5.037

GRAVY (calculated)

-0.487

Length

377 amino acids

Sequence
(BLAST)

001: MSNGVGEGGR TQIRESQGKR KLFQGSDFAY AIARMAVAQI CESVEVNVYQ DSHTTREGLR FSSFQESALD KLTGVAVQYV QSIGKTAKLY ANVAGRVEGN
101: SLDVVQALED LGSGVGFAGV SDTDRCLAGS SVVKDVIRYT GEAEEMPFVF ALPRFPVNRE KRPAPSFYEV GVEPPDEHIP VWLPAFPRTK SCHISEEANA
201: GAIEVEVGSK ENGPSLPSIQ HSFNGGGLEV LKSPNDVRKS TEGEEEVEGN PFLTAPLRFV EKEVSPVFGP VELSINHVPD KNMSNNHRIP VLEASTPSDD
301: INKENGFAES EDGEKKDGAR PQQTLLRFKV GTLKRPSCLA IKRSVQEQGW FQEGGDKREK KLGTERIDLG TVVSDVK

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.