CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039159.1-P	Field mustard	nucleus	97.08	97.08
CDY43254	Canola	nucleus	70.03	73.33
CDX74271	Canola	cytosol	63.93	64.27
CDX91978	Canola	cytosol, extracellular, nucleus	65.52	63.5
AT3G02160.1	Thale cress	cytosol	61.27	58.19
VIT_14s0068g00340.t01	Wine grape	nucleus	36.07	36.07
KRH01313	Soybean	cytosol	32.36	32.02
KRH45059	Soybean	cytosol	32.1	31.76
GSMUA_Achr11P...	Banana	nucleus	29.44	30.75
TraesCS7D01G036000.1	Wheat	mitochondrion	25.2	27.94
Os12t0574800-02	Rice	nucleus	27.06	27.87
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	25.2	27.14
TraesCS5B01G084700.1	Wheat	cytosol	25.99	27.07
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	25.73	26.94
TraesCS5A01G081700.1	Wheat	cytosol	25.73	26.8
GSMUA_Achr9P26740_001	Banana	nucleus	22.81	26.3
EES15849	Sorghum	cytosol	25.99	26.06
TraesCSU01G065200.1	Wheat	cytosol	24.4	25.92
EES17247	Sorghum	cytosol	25.2	25.82
Zm00001d041530_P001	Maize	cytosol	24.4	25.77
Zm00001d041766_P001	Maize	cytosol	24.4	24.86
CDY69783	Canola	nucleus	23.34	24.51
CDX75423	Canola	nucleus	22.55	24.5
Os03t0603300-01	Rice	cytosol, plastid	18.04	24.37
GSMUA_Achr9P09310_001	Banana	nucleus	21.22	24.02
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	24.4	23.41
CDY02371	Canola	cytosol	13.26	20.92

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	UniProt:A0A078J9Q7	InterPro:BTP	EnsemblPlants:CDY60474	ProteinID:CDY60474
ProteinID:CDY60474.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00029642001
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576
InterPro:TAF8	UniParc:UPI0004EDC61A	:	:	:	:

Description

BnaAnng16860DBnaAnng16860D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J9Q7]

Coordinates

chrLK033884:-:34826..35959

Molecular Weight (calculated)

40910.0 Da

IEP (calculated)

4.886

GRAVY (calculated)

-0.484

Length

377 amino acids

Sequence
(BLAST)

001: MSNGVGEGGR TQSRESQGKR KLFQGSDFAY AIARMAVAQI CESVEVNVYQ ESQTTREGLR FSSFQESALD KLTGVAVQYV QSVGKTAKLY ANVAGRVEGN
101: SLDVVQALED LGSGVGFGGV SDTDRCLAGS SVVKDVIRYT GEAEEMPFVY ALPRFPISKE KRVAPSFYEV GVEPPDEHIP VWLPAFPGTK SCHISEEANA
201: GAIEVEVGSK ENGPSLPSIQ HSFNGGGLEV LKSPNDVRKS TEGEEEVEGN PFLTAPLRFV EKEVSPVFGP VELSINHVPD KNMSNNHRIP VLEASTPSDD
301: INKENGFAES EDGEKKDGAR PQQTLLRFKV GTLKRPSCLA IKRSVQEQGW FQEGGDKREK KLGTERIDLG TVVSDVK

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.