CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60474	Canola	nucleus	73.33	70.03
AT3G02160.1	Thale cress	cytosol	59.44	53.9
CDX74271	Canola	cytosol	55.56	53.33
CDX91978	Canola	cytosol, extracellular, nucleus	56.11	51.93
VIT_14s0068g00340.t01	Wine grape	nucleus	36.11	34.48
GSMUA_Achr11P...	Banana	nucleus	30.83	30.75
KRH01313	Soybean	cytosol	32.5	30.71
KRH45059	Soybean	cytosol	31.67	29.92
Os12t0574800-02	Rice	nucleus	27.22	26.78
GSMUA_Achr9P26740_001	Banana	nucleus	24.17	26.61
TraesCS7D01G036000.1	Wheat	mitochondrion	24.72	26.18
GSMUA_Achr9P09310_001	Banana	nucleus	24.17	26.13
TraesCS7A01G040600.1	Wheat	cytosol, mitochondrion	24.72	25.43
TraesCS5D01G090900.1	Wheat	cytosol, nucleus, plastid	25.28	25.28
Zm00001d041530_P001	Maize	cytosol	25.0	25.21
TraesCS5A01G081700.1	Wheat	cytosol	25.28	25.14
TraesCS5B01G084700.1	Wheat	cytosol	25.28	25.14
CDY69783	Canola	nucleus	24.72	24.79
EES17247	Sorghum	cytosol	25.28	24.73
TraesCSU01G065200.1	Wheat	cytosol	24.17	24.51
CDX75423	Canola	nucleus	23.33	24.21
EES15849	Sorghum	cytosol	25.28	24.2
Zm00001d041766_P001	Maize	cytosol	24.44	23.78
Os03t0603300-01	Rice	cytosol, plastid	18.33	23.66
HORVU7Hr1G006990.9	Barley	mitochondrion, plastid	25.56	23.41
CDY02371	Canola	cytosol	14.44	21.76

Protein Annotations

Gene3D:1.10.20.10	MapMan:15.3.5.3.8	UniProt:A0A078I0Z2	InterPro:BTP	EnsemblPlants:CDY43254	ProteinID:CDY43254
ProteinID:CDY43254.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0005669	GO:GO:0046982	EnsemblPlantsGene:GSBRNA2T00076285001
InterPro:Histone-fold	InterPro:IPR009072	PFAM:PF07524	PANTHER:PTHR12321	PANTHER:PTHR12321:SF53	SMART:SM00576
InterPro:TAF8	UniParc:UPI0004EEC3C4	:	:	:	:

Description

BnaC05g48470DBnaC05g48470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0Z2]

Coordinates

chrLK032550:-:105741..107337

Molecular Weight (calculated)

39694.6 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.483

Length

360 amino acids

Sequence
(BLAST)

001: MSNGVGEGGR AQSREKRKLF QANDFAYAIA RMAVAQICES VEVNVYQESQ TTREGLRFSS FQESTLDKLA SVAVEYVQSI GKTAQLYANV AGRVEGNSLD
101: VVQALEDLGS GVGFAGVSDT DRCLADSSVV KDVIRYTGEA EEVPFVYALP RFPVNKEKRL APSFFEVGVD PPDEHIPVWL PAFPGTKSCN LSEEANAVAI
201: EGEVQHSFNG GGRSEVLQSP NDVRKSTEEV EGNPFLTAPL RFVKKEVSPL FRPLELSIKH FPDKHMSNSH RIPVLEASTP SDDINKENWL AESEDGEKKD
301: GARPQQTLLR FKIGTLKRPS CLAIKRSVQE QGWFQEGGDK WEKKLGTERI DLGTVDSDVK

Best Arabidopsis Sequence Match ( AT3G02160.2 )
(BLAST)

001: MVLHVMLGEV VTKFLNMNNG VGEGGSQQRE LHGKRKLFRG NDFAFSIARM AVAQICESVE VNPYQESQTR EGVRFSSFQE SALDTLTDVA VQYIQSIGKT
101: AHLYANLAGR VDGNSLDILQ ALEDLGSGLG FAGVSDTDHC LADSGVVKDI IRYTGEAEEI PFVYSLPRFP FSKEKKPAPS FSEVGAEPPD EHIPVWLPAF
201: PETELCDRSE ETNAATIEGE IPSKENGSSL PSMQLSFDGG GRLEIHKSSK DVGESTEAVV EGNLFLTAPL RFVEKNVSPV VRPLELSNEV VRTNHVPDKH
301: VRNNHHIPIL EASAPSDKIN NKNWLAISKD VEKVDVARKE LTLVRFKIGT TKRSMCLAKN RSFQEEGWFQ EGEDKREKTS EIKEKRERID SQLSTQM

Arabidopsis Description

At3g02160 [Source:UniProtKB/TrEMBL;Acc:Q9S7R9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.