Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G040600.1 | Wheat | cytosol, mitochondrion | 90.0 | 87.43 |
| TraesCSU01G065200.1 | Wheat | cytosol | 90.59 | 86.76 |
| TraesCS5D01G090900.1 | Wheat | cytosol, nucleus, plastid | 56.47 | 53.33 |
| Os03t0603300-01 | Rice | cytosol, plastid | 41.18 | 50.18 |
| HORVU7Hr1G006990.9 | Barley | mitochondrion, plastid | 56.47 | 48.85 |
| GSMUA_Achr11P... | Banana | nucleus | 37.94 | 35.73 |
| GSMUA_Achr9P26740_001 | Banana | nucleus | 33.82 | 35.17 |
| VIT_08s0040g01420.t01 | Wine grape | cytosol, nucleus, plastid | 35.59 | 32.88 |
| KRH19914 | Soybean | cytosol | 33.82 | 32.49 |
| KRH32528 | Soybean | cytosol | 32.65 | 31.18 |
| GSMUA_Achr9P09310_001 | Banana | nucleus | 30.29 | 30.93 |
| VIT_14s0068g00340.t01 | Wine grape | nucleus | 34.12 | 30.77 |
| Solyc09g008150.1.1 | Tomato | nucleus | 33.24 | 30.29 |
| KRH01313 | Soybean | cytosol | 33.53 | 29.92 |
| PGSC0003DMT400009911 | Potato | nucleus | 32.65 | 29.68 |
| KRH45059 | Soybean | cytosol | 32.06 | 28.61 |
| AT4G34340.1 | Thale cress | nucleus | 27.65 | 26.63 |
| CDX75423 | Canola | nucleus | 26.76 | 26.22 |
| Bra011521.1-P | Field mustard | nucleus | 26.47 | 26.01 |
| Bra039159.1-P | Field mustard | nucleus | 28.53 | 25.73 |
| Bra008690.1-P | Field mustard | nucleus | 27.35 | 25.69 |
| CDY60474 | Canola | nucleus | 27.94 | 25.2 |
| CDY69783 | Canola | nucleus | 26.47 | 25.07 |
| CDY43254 | Canola | nucleus | 26.18 | 24.72 |
| Bra023525.1-P | Field mustard | cytosol | 26.76 | 24.14 |
| AT3G02160.1 | Thale cress | cytosol | 27.35 | 23.43 |
| AT5G15570.1 | Thale cress | nucleus | 25.29 | 22.57 |
| CDX74271 | Canola | cytosol | 24.41 | 22.13 |
| Bra001033.1-P | Field mustard | cytosol | 24.12 | 21.69 |
| CDX91978 | Canola | cytosol, extracellular, nucleus | 24.71 | 21.59 |
Protein Annotations
| EnsemblPlants:TraesCS7D01G036000.1 | EnsemblPlantsGene:TraesCS7D01G036000 | Gene3D:1.10.20.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046982 | InterPro:BTP | InterPro:Histone-fold | InterPro:IPR009072 | InterPro:TFIID_su8_C | PANTHER:PTHR12321 |
| PANTHER:PTHR12321:SF45 | PFAM:PF07524 | PFAM:PF10406 | SEG:seg | SMART:SM00576 | TIGR:cd08049 |
| MapMan:15.3.5.3.8 | : | : | : | : | : |
Description
No Description!
Coordinates
chr7D:-:18425233..18426255
Molecular Weight (calculated)
36339.0 Da
IEP (calculated)
8.231
GRAVY (calculated)
-0.451
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGGGADEFG RATARAAVAR ALQAAGFASA TRSAVDALAD VLLRYLRLLG AAANAHANLA GRSAPNELDV VQFLEEAGEA YQGFEGASST RGRCLVSSGV
101: VKDLVAFAGD ADDKPQSVRR PLPRFPVRHD PPPARSCVSF AALGRGSGMR HVPEWLPAFP EPHTYASADE SGEMVGGSAV AVDEVEQVRR QRKAEKSLLG
201: LQRQLALAGG NGIRPAMVEE NGAGKGKELD RAVVKSNPFL QSALRYGDKE VSEVGMPNLG KKHSVLDEFA PAFAESEGEG LDEGRRDQDQ GQGRKRIVPK
301: ERPPVVMALN SRDRKGPWFL EDDRKRRALS ILAEPIEKPS
101: VKDLVAFAGD ADDKPQSVRR PLPRFPVRHD PPPARSCVSF AALGRGSGMR HVPEWLPAFP EPHTYASADE SGEMVGGSAV AVDEVEQVRR QRKAEKSLLG
201: LQRQLALAGG NGIRPAMVEE NGAGKGKELD RAVVKSNPFL QSALRYGDKE VSEVGMPNLG KKHSVLDEFA PAFAESEGEG LDEGRRDQDQ GQGRKRIVPK
301: ERPPVVMALN SRDRKGPWFL EDDRKRRALS ILAEPIEKPS
001: MINGGGEGGS QRRELQGKRS MSRGNDFAYA LARMATAQIC ESVEINSYQE SSQSREGLRF SSFQETALET LTDVVIQYIQ NIGKTAQFYV NMAGRVESNA
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K
101: LDIVQALEDL GSGLGFDGAH DVEHCLADSG VVKDIIRYTG EAEEIPFVYS LPRFPFNRGK RPAPSFSDIG VEPPDEHIPV WLPAFPETKM SNGSEEINVD
201: KIERDVQSRD NGSSLMSVQQ SVDVDRLKVQ KSMDQKDVQK PIEEPEGNPF LAAPIWVGEK NVSLSRVVCP SELRKEEIST NHLPEKHMSM SHHIPALEAY
301: ALSDKINDKN RLAGMEDEQK RDGARTQGAL LRFKIGTRKA SECWKINQCL EEKGWFKEDG NKREKKVERE EKSESIDADV K
Arabidopsis Description
Bromodomain transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9LF25]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.