Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G160000.1 | Wheat | nucleus | 97.29 | 97.64 |
| TraesCS4A01G163100.1 | Wheat | nucleus | 95.64 | 97.01 |
| HORVU4Hr1G034590.13 | Barley | cytosol, nucleus | 90.34 | 88.26 |
| Os03t0441000-01 | Rice | nucleus | 69.49 | 72.04 |
| OQU92338 | Sorghum | nucleus | 68.55 | 64.59 |
| Zm00001d029598_P003 | Maize | nucleus | 66.2 | 60.56 |
| CDX71498 | Canola | cytosol | 7.42 | 59.43 |
| CDX71499 | Canola | nucleus | 7.42 | 39.62 |
| GSMUA_Achr4P03380_001 | Banana | nucleus | 40.16 | 38.84 |
| CDY58727 | Canola | peroxisome | 4.48 | 38.38 |
| Bra033662.1-P | Field mustard | nucleus | 34.39 | 37.87 |
| CDY22365 | Canola | nucleus | 34.28 | 37.6 |
| CDY46486 | Canola | nucleus, plastid | 3.89 | 37.5 |
| VIT_18s0001g09310.t01 | Wine grape | nucleus | 40.05 | 36.72 |
| Bra035961.1-P | Field mustard | nucleus | 33.69 | 36.71 |
| CDY25235 | Canola | nucleus | 33.69 | 36.34 |
| Solyc04g078050.2.1 | Tomato | nucleus | 39.34 | 35.76 |
| CDY30789 | Canola | mitochondrion | 34.28 | 35.75 |
| TraesCS6B01G281300.1 | Wheat | nucleus | 33.33 | 35.6 |
| GSMUA_Achr4P14210_001 | Banana | nucleus | 35.22 | 35.55 |
| AT5G43130.2 | Thale cress | nucleus | 34.16 | 34.04 |
| KRH61389 | Soybean | nucleus | 36.51 | 33.88 |
| KRH15434 | Soybean | nucleus | 36.04 | 32.73 |
| CDY68956 | Canola | nucleus | 21.08 | 32.55 |
| KRH52077 | Soybean | nucleus | 35.34 | 32.15 |
| KRH05606 | Soybean | mitochondrion | 35.92 | 31.25 |
| AT1G27720.1 | Thale cress | nucleus | 25.91 | 30.56 |
| CDY60273 | Canola | nucleus | 25.21 | 29.8 |
| CDY03944 | Canola | nucleus | 26.15 | 26.12 |
| Bra030061.1-P | Field mustard | mitochondrion, nucleus | 23.91 | 25.28 |
| PGSC0003DMT400055395 | Potato | nucleus | 15.19 | 22.01 |
Protein Annotations
| MapMan:15.3.5.3.4 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0005669 | GO:GO:0006139 | GO:GO:0006352 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | PFAM:PF05236 | PFAM:PF12174 | PANTHER:PTHR15138 | PANTHER:PTHR15138:SF16 |
| InterPro:RST | InterPro:TAF4 | EnsemblPlantsGene:TraesCS4B01G150300 | EnsemblPlants:TraesCS4B01G150300.3 | TIGR:cd08045 | SEG:seg |
Description
No Description!
Coordinates
chr4B:+:232096998..232119302
Molecular Weight (calculated)
92599.8 Da
IEP (calculated)
9.945
GRAVY (calculated)
-0.855
Length
849 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPIMKLLED DEEDESMHSG ADVEAFTAAL NREVEGSASS SSSAAAAFSF QPLDHAAGTL PQKSNPVVNN SHGQWQGSVK NDSGNQESQQ QEEKHLYCKK
101: EQSSGPEAVP IGADNKQLHS NTQIECLQLK VKREPGNNAQ QSTVGQQQPM QQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPPANP SSYSMSSQVP GQHNESPRPP QFRPSSSGQM QSNMGYAASE GNLQKPNETG
301: NMSDRKGLQM LQSRPPNIHS IPLQATQDHV QRPQTFLPAL GANNIHSCQV PQSVGGPIAP LRPQMTDSSQ RGQSVQGGVA SVLGSMATRP ALQNNQPSQQ
401: QPNKEQKTNS FTPTVHMNKE TANQPSESGQ SSFAALNAKQ VNPGLLSSKA GGVLENQSST LATPKSLTTT SSSQPHPSYG TPAELNMQIQ PSTQAPPSGA
501: ASKTPEKKPS AGQKKPLEAI GSSPPPSGKK QKGSGGFHDQ SIDQLNDVTA VSGVNLREEE EQLFSAPKEE SRVSEAARKV VQLEEERLIL QKGPLTKKLA
601: EIMRKYNLKS IGCDVERCLS MCVEERLRGF ISNTIRLSKQ RVDVEKSRHH YYPLSSDVRS HILRVNREAR EQWDRKLAAD ANRIRKQSDG DDNSVVSSEK
701: DKAESRGTSK HAKTYKEEDD KMRTTAANAA VRVAAGGDDM LSKWQLLAEK NKLRGEGGDG SSDSLPGTML PHKLSPKAGK GSREQQEIEK RGYFSMLGPG
801: GVRRSAHMKV ARSITVKDVV AALEREHQMS KSSLLFRLHG RQSTEPASK
101: EQSSGPEAVP IGADNKQLHS NTQIECLQLK VKREPGNNAQ QSTVGQQQPM QQIKSQQPPG TNQTNSSPAM VGKPPVVTFH MLIPILRRYL DKDRDIQVQS
201: IFAKLRKNEV SKEHFLKVIR TIVGDKLLKQ AASQYQMQAA QAQRNPPANP SSYSMSSQVP GQHNESPRPP QFRPSSSGQM QSNMGYAASE GNLQKPNETG
301: NMSDRKGLQM LQSRPPNIHS IPLQATQDHV QRPQTFLPAL GANNIHSCQV PQSVGGPIAP LRPQMTDSSQ RGQSVQGGVA SVLGSMATRP ALQNNQPSQQ
401: QPNKEQKTNS FTPTVHMNKE TANQPSESGQ SSFAALNAKQ VNPGLLSSKA GGVLENQSST LATPKSLTTT SSSQPHPSYG TPAELNMQIQ PSTQAPPSGA
501: ASKTPEKKPS AGQKKPLEAI GSSPPPSGKK QKGSGGFHDQ SIDQLNDVTA VSGVNLREEE EQLFSAPKEE SRVSEAARKV VQLEEERLIL QKGPLTKKLA
601: EIMRKYNLKS IGCDVERCLS MCVEERLRGF ISNTIRLSKQ RVDVEKSRHH YYPLSSDVRS HILRVNREAR EQWDRKLAAD ANRIRKQSDG DDNSVVSSEK
701: DKAESRGTSK HAKTYKEEDD KMRTTAANAA VRVAAGGDDM LSKWQLLAEK NKLRGEGGDG SSDSLPGTML PHKLSPKAGK GSREQQEIEK RGYFSMLGPG
801: GVRRSAHMKV ARSITVKDVV AALEREHQMS KSSLLFRLHG RQSTEPASK
001: MKLQKMSSKE TPWVEKTVDP VNHNLRLARV TDLLRTVVDH QPGKKTHCLN LHYKLKRKEL TMEEFMRQLR DLVGDQIIRS VISQLPQLKP GNMGIKVPGR
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
101: SNHDKVSKSA EFTAQESDPR EVHVNQLSST TSGTLNSSTT VQGLNKHPEQ HMQLPSSSFH MDTKSGSLNP YPGTNVTSPG SSSRAKLPDF QHRENNQNVG
201: IASVGGPTKS TINMTTVPKF ERPTFVNGPS RVQDGPISDF PKNSSFPLYS APWQGSVTKD HTVGPSSSVI HVEHKLIDQS FEQAHKPRYL VQQGVTNVPL
301: KQKNAIPISS NDDLEKQSSK MGLFTSTTSA SSVFPSMTTQ LDSSTMVNMP APSETIPKIA NVTVTPKMPS VGQKKPLEAL GSSLPPSRKK QKICGTSSDE
401: SIEKFNDVTA VSGINLREEE KQLLDSGPKK NDRVSKAYRR LVHGEEERTL LQKIPLQRKL TEIMGKSGLK HIDHDVERCL SLCVEERMRG LLFNIIRISK
501: QRTDAEKCRN RTFITSDIRK EINEMNQKVK EEWEKKHSGE EKNKENDTEK EDQRSNEVKA NKKDEDKERA KAANVAVRAA VGGDDRFSKW KLMAEARQRS
601: SPGPGRNSKK LSGGTQFGKN QGLPKVVRSI SVKDVIAVVE KEPQMSRSTL LYRVYNRICS DV
Arabidopsis Description
TAF4Transcription initiation factor TFIID subunit 4 [Source:UniProtKB/Swiss-Prot;Acc:Q6SJR1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.