Factsheet for TraesCS5B01G176600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G504600.1
TraesCS2D01G505300.1
TraesCS3A01G362900.1
TraesCS3B01G395300.2
TraesCS3D01G356600.1
TraesCS4A01G163100.1
TraesCS4B01G150300.3
TraesCS4D01G160000.1
TraesCS6A01G161300.1
TraesCS6A01G242900.1
TraesCS6A01G412800.1
TraesCS6B01G190100.1
TraesCS6B01G281300.1
TraesCS6B01G462100.1
TraesCS6D01G151600.1
TraesCS6D01G225200.2
TraesCS6D01G397000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	TraesCS3A01G362900.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS3B01G395300.2	AT1G17440.1	17340043
AT1G50300.1	TraesCS3D01G356600.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6A01G161300.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6B01G190100.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS6D01G151600.1	AT1G17440.1	17340043
AT1G50300.1	TraesCS4A01G163100.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS4B01G150300.3	AT1G27720.1	17340043
AT1G50300.1	TraesCS4D01G160000.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6A01G242900.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6B01G281300.1	AT1G27720.1	17340043
AT1G50300.1	TraesCS6D01G225200.2	AT1G27720.1	17340043
AT1G50300.1	TraesCS2A01G504600.1	AT1G71230.1	21798944
AT1G50300.1	TraesCS2D01G505300.1	AT1G71230.1	21798944
AT1G50300.1	TraesCS6A01G412800.1	AT5G08330.1	21798944
AT1G50300.1	TraesCS6B01G462100.1	AT5G08330.1	21798944
AT1G50300.1	TraesCS6D01G397000.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G054500.18	Barley	nucleus	98.21	97.96
TraesCS5D01G183400.3	Wheat	nucleus	98.72	94.84
TraesCS5A01G178900.3	Wheat	nucleus	98.47	94.59
Os09t0299500-01	Rice	nucleus	34.02	83.12
Os07t0296200-01	Rice	nucleus	80.56	79.95
Zm00001d021426_P002	Maize	nucleus	79.54	79.74
EER99320	Sorghum	nucleus	77.49	77.3
PGSC0003DMT400048896	Potato	nucleus	67.52	68.22
CDY67548	Canola	nucleus	65.98	67.89
CDY03594	Canola	nucleus	65.73	67.81
Solyc11g040050.1.1	Tomato	nucleus	67.26	67.61
AT1G50300.1	Thale cress	nucleus	64.19	67.47
Bra014245.1-P	Field mustard	nucleus	65.47	67.37
CDY42510	Canola	nucleus	64.96	66.32
KRH62947	Soybean	nucleus	23.79	65.96
KRH75898	Soybean	nucleus	32.23	65.62
Bra018839.1-P	Field mustard	nucleus	63.17	65.52
VIT_01s0010g01410.t01	Wine grape	nucleus	69.31	65.46
CDY22787	Canola	nucleus	62.92	65.25
KRH24217	Soybean	nucleus	62.92	64.4
KRH29220	Soybean	nucleus	63.43	64.25
GSMUA_Achr8P27040_001	Banana	cytosol	15.35	58.25
GSMUA_Achr8P27030_001	Banana	cytosol	17.14	44.97
GSMUA_Achr6P27180_001	Banana	nucleus	69.82	44.68

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209
EnsemblPlantsGene:TraesCS5B01G176600	EnsemblPlants:TraesCS5B01G176600.1	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	TIGR:cd12534	SEG:seg

Description

No Description!

Coordinates

chr5B:-:322553304..322555759

Molecular Weight (calculated)

43488.8 Da

IEP (calculated)

8.932

GRAVY (calculated)

-1.303

Length

391 amino acids

Sequence
(BLAST)

001: MAGYMSRGPP NGSIYVCNLP PGTDETMLAE YFGTIGLLKK DKRTGHPKIW IYRDKVTNEP KGDATVTYED PHAASAAVEW FNNKDFHGSI IQVHIAESKN
101: KDTVDNFTNV SIDAEIVGQD ELDNGSGRGR GRGDGPAKAW QQDGDWMCPN TSCGNVNFAF RGVCNRCGAS RPAGVSGSGG GGGRGRGRGS DDARGSRAAA
201: AVGGPPGLFG PNDWPCTMCG NVNWAKRTKC NVCNTSRPGH NEGGVRGGRG GGFKELDEEE LEEVRRRRKE AEEDDGEMYD EFGNLKKKFR AKSHQTESAP
301: TLPGSGRAGW EVEHRGSTER EGRERSRDRG RDDYDERESR NRDRGSHGRE RRRSRSRSRD REKERGRDRG RDRGNERSWE RGTERERDRY R

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.