Factsheet for Zm00001d021426_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002027_P002
Zm00001d012396_P003
Zm00001d018530_P001
Zm00001d029598_P003
Zm00001d039729_P004
Zm00001d039731_P002
Zm00001d042879_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Zm00001d012396_P003	AT1G17440.1	17340043
AT1G50300.1	Zm00001d042879_P002	AT1G17440.1	17340043
AT1G50300.1	Zm00001d029598_P003	AT1G27720.1	17340043
AT1G50300.1	Zm00001d039729_P004	AT1G27720.1	17340043
AT1G50300.1	Zm00001d039731_P002	AT1G27720.1	17340043
AT1G50300.1	Zm00001d002027_P002	AT1G71230.1	21798944
AT1G50300.1	Zm00001d018530_P001	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99320	Sorghum	nucleus	88.21	87.76
Os09t0299500-01	Rice	nucleus	34.87	85.0
TraesCS5B01G176600.1	Wheat	nucleus	79.74	79.54
HORVU5Hr1G054500.18	Barley	nucleus	78.97	78.57
Os07t0296200-01	Rice	nucleus	78.72	77.92
TraesCS5A01G178900.3	Wheat	nucleus	79.49	76.17
TraesCS5D01G183400.3	Wheat	nucleus	79.23	75.92
KRH62947	Soybean	nucleus	25.38	70.21
PGSC0003DMT400048896	Potato	nucleus	68.21	68.73
Solyc11g040050.1.1	Tomato	nucleus	68.46	68.64
CDY03594	Canola	nucleus	66.15	68.07
AT1G50300.1	Thale cress	nucleus	64.87	68.01
CDY67548	Canola	nucleus	65.64	67.37
KRH75898	Soybean	nucleus	33.08	67.19
Bra014245.1-P	Field mustard	nucleus	65.38	67.11
CDY42510	Canola	nucleus	65.38	66.58
VIT_01s0010g01410.t01	Wine grape	nucleus	70.51	66.43
CDY22787	Canola	nucleus	63.85	66.05
Bra018839.1-P	Field mustard	nucleus	63.85	66.05
KRH24217	Soybean	nucleus	64.1	65.44
KRH29220	Soybean	nucleus	63.59	64.25
GSMUA_Achr8P27040_001	Banana	cytosol	15.38	58.25
GSMUA_Achr8P27030_001	Banana	cytosol	17.44	45.64
GSMUA_Achr6P27180_001	Banana	nucleus	70.77	45.17

Protein Annotations

EntrezGene:103633132	MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	UniProt:A0A1D6IAU9	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf
ProteinID:ONM57095.1	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199
PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547
SUPFAM:SSF54928	SUPFAM:SSF90209	UniParc:UPI0004DEBA6D	EnsemblPlantsGene:Zm00001d021426	EnsemblPlants:Zm00001d021426_P002	EnsemblPlants:Zm00001d021426_T002
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

Transcription initiation factor TFIID subunit 15

Coordinates

chr7:+:151842895..151845660

Molecular Weight (calculated)

43278.8 Da

IEP (calculated)

9.056

GRAVY (calculated)

-1.285

Length

390 amino acids

Sequence
(BLAST)

001: MAGYMSRGPQ NGSVYVCNLP PGTDENMLAE YFGTIGLLKK DKRTGRPKIW IYRDKVTNEP KGDATVTYED PHAASAAVEW FDNKDFHGST IQVHIAESKS
101: KDAFDNPTSL NIIGGVGEQD ELDNGAGRGR GRGDGPGKAW QQDGDWMCPN TSCGNVNFAF RGVCNRCGAA RPAGAGGTAA GGGGRGRGRG SSDARGSSHA
201: GAAVGGPPGL FGPNDWPCPM CGNINWAKRT KCNICNTSKP GTNEGGVRGG RGGGYKELDE EELEEVKKRR KEAEEDDGEI YDEFGNLKKK FRSKALHTEG
301: AQALPGSGRA GWEVEHRGPS EREGRERSRD RVRDDYYEKE TRGRDRGDLG RDQRRSRSRS RDRERERRER RREHDYERRE RDRDRDRRHR

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.