Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr4P14200_001 | |
| GSMUA_Achr7P10670_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH29220 | Soybean | nucleus | 47.65 | 18.39 |
| Os07t0296200-01 | Rice | nucleus | 48.32 | 18.27 |
| VIT_01s0010g01410.t01 | Wine grape | nucleus | 49.66 | 17.87 |
| EER99320 | Sorghum | nucleus | 46.98 | 17.86 |
| KRH24217 | Soybean | nucleus | 44.97 | 17.54 |
| Zm00001d021426_P002 | Maize | nucleus | 45.64 | 17.44 |
| TraesCS5B01G176600.1 | Wheat | nucleus | 44.97 | 17.14 |
| KRH62947 | Soybean | nucleus | 16.11 | 17.02 |
| AT1G50300.1 | Thale cress | nucleus | 42.28 | 16.94 |
| Bra014245.1-P | Field mustard | nucleus | 42.95 | 16.84 |
| HORVU5Hr1G054500.18 | Barley | nucleus | 44.3 | 16.84 |
| Bra018839.1-P | Field mustard | nucleus | 42.28 | 16.71 |
| TraesCS5A01G178900.3 | Wheat | nucleus | 45.64 | 16.71 |
| CDY67548 | Canola | nucleus | 42.28 | 16.58 |
| PGSC0003DMT400048896 | Potato | nucleus | 42.95 | 16.54 |
| TraesCS5D01G183400.3 | Wheat | nucleus | 44.97 | 16.46 |
| Solyc11g040050.1.1 | Tomato | nucleus | 42.95 | 16.45 |
| CDY42510 | Canola | nucleus | 42.28 | 16.45 |
| CDY22787 | Canola | nucleus | 41.61 | 16.45 |
| CDY03594 | Canola | nucleus | 41.61 | 16.36 |
| KRH75898 | Soybean | nucleus | 18.12 | 14.06 |
| GSMUA_Achr6P27180_001 | Banana | nucleus | 51.68 | 12.6 |
| GSMUA_Achr8P27040_001 | Banana | cytosol | 2.01 | 2.91 |
| Os09t0299500-01 | Rice | nucleus | 0.67 | 0.62 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P27030_001 | EnsemblPlants:GSMUA_Achr8T27030_001 | EnsemblPlantsGene:GSMUA_Achr8G27030_001 | PANTHER:PTHR12999 | PANTHER:PTHR12999:SF7 | UniParc:UPI0002954D3F |
| UniProt:M0TU06 | MapMan:35.1 | : | : | : | : |
Description
Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G27030_001]
Coordinates
chr8:-:30340197..30342597
Molecular Weight (calculated)
16852.0 Da
IEP (calculated)
8.163
GRAVY (calculated)
-0.894
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MRECHNNNKQ KDCVSCHTCG NINWAKCMKC NICNTNKSGH SECGVSMLEM QLLMVIKQAN KHVCSFGFSH IGLLDDGEIY DEFGNLKKKF HAKTQQAESG
101: QMVPGSGRAG WEVDEIVMTG RHGMDKSRDS NKRESSKNRE IDGPERERR
101: QMVPGSGRAG WEVDEIVMTG RHGMDKSRDS NKRESSKNRE IDGPERERR
001: MAESKNKNAG DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP
101: GKQPSGAPTG LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD
201: TRPAVAAGRA GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
101: GKQPSGAPTG LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD
201: TRPAVAAGRA GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN
Arabidopsis Description
TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.