Factsheet for Os09t0299500-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 3
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, peroxisome, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0846900-01
Os02t0654400-01
Os02t0828566-01
Os03t0422702-00
Os03t0441000-01
Os04t0654700-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Os01t0846900-01	AT1G17440.1	17340043
AT1G50300.1	Os02t0654400-01	AT1G27720.1	17340043
AT1G50300.1	Os03t0441000-01	AT1G27720.1	17340043
AT1G50300.1	Os04t0654700-02	AT1G71230.1	21798944
AT1G50300.1	Os02t0828566-01	AT5G08330.1	21798944
AT1G50300.1	Os03t0422702-00	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P27040_001	Banana	cytosol	33.75	52.43
Os07t0296200-01	Rice	nucleus	88.75	36.04
EER99320	Sorghum	nucleus	85.62	34.95
Zm00001d021426_P002	Maize	nucleus	85.0	34.87
KRH75898	Soybean	nucleus	41.25	34.38
TraesCS5B01G176600.1	Wheat	nucleus	83.12	34.02
HORVU5Hr1G054500.18	Barley	nucleus	83.12	33.93
TraesCS5D01G183400.3	Wheat	nucleus	83.12	32.68
TraesCS5A01G178900.3	Wheat	nucleus	83.12	32.68
KRH62947	Soybean	nucleus	26.88	30.5
PGSC0003DMT400048896	Potato	nucleus	70.62	29.2
Solyc11g040050.1.1	Tomato	nucleus	70.62	29.05
CDY03594	Canola	nucleus	68.12	28.76
KRH24217	Soybean	nucleus	68.12	28.53
AT1G50300.1	Thale cress	nucleus	66.25	28.49
CDY67548	Canola	nucleus	67.5	28.42
CDY42510	Canola	nucleus	66.88	27.94
Bra014245.1-P	Field mustard	nucleus	66.25	27.89
KRH29220	Soybean	nucleus	66.88	27.72
VIT_01s0010g01410.t01	Wine grape	nucleus	70.62	27.29
CDY22787	Canola	nucleus	62.5	26.53
Bra018839.1-P	Field mustard	nucleus	61.88	26.26
GSMUA_Achr6P27180_001	Banana	nucleus	67.5	17.68
GSMUA_Achr8P27030_001	Banana	cytosol	0.62	0.67

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	UniProt:A0A0N7KQI8	ProteinID:BAT07338.1	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os09g0299500
EnsemblPlants:Os09t0299500-01	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR23238	InterPro:RBD_domain_sf	InterPro:RRM_dom
SMART:SM00360	SUPFAM:SSF54928	InterPro:TET_fam	UniParc:UPI000393A292	SEG:seg	:

Description

Similar to predicted protein. (Os09t0299500-01)

Coordinates

chr9:-:7347444..7351867

Molecular Weight (calculated)

17316.1 Da

IEP (calculated)

6.100

GRAVY (calculated)

-0.690

Length

160 amino acids

Sequence
(BLAST)

001: MAGYMSRGPP NGSVYVCNLP PGTDETMLAD YFGTIGLLKK DKRTGRPKIW IYRDKVTNEP KGDATVTYED PHAASAAVEW FNNKDFHGST IQVHIAESKN
101: KDTYDNSASL NNSAGLGGQD ELDNGAGRGR GHGDGPGKAW QQDGDWLCPN TRSVLIVVAM

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.