Factsheet for Bra014245.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010996.1-P
Bra012474.1-P
Bra024741.1-P
Bra025975.1-P
Bra028662.1-P
Bra030061.1-P
Bra030989.1-P
Bra035030.1-P
Bra039992.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Bra025975.1-P	AT1G17440.1	17340043
AT1G50300.1	Bra030989.1-P	AT1G17440.1	17340043
AT1G50300.1	Bra010996.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra012474.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra024741.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra035030.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra039992.1-P	AT1G25490.1	21798944
AT1G50300.1	Bra030061.1-P	AT1G27720.1	17340043
AT1G50300.1	Bra028662.1-P	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY67548	Canola	nucleus	97.89	97.89
CDY03594	Canola	nucleus	97.63	97.89
Bra018839.1-P	Field mustard	nucleus	90.0	90.72
AT1G50300.1	Thale cress	nucleus	85.53	87.37
PGSC0003DMT400048896	Potato	nucleus	70.26	68.99
KRH62947	Soybean	nucleus	25.53	68.79
KRH75898	Soybean	nucleus	34.74	68.75
Solyc11g040050.1.1	Tomato	nucleus	69.74	68.12
KRH24217	Soybean	nucleus	67.11	66.75
Os09t0299500-01	Rice	nucleus	27.89	66.25
VIT_01s0010g01410.t01	Wine grape	nucleus	72.11	66.18
KRH29220	Soybean	nucleus	67.11	66.06
TraesCS5B01G176600.1	Wheat	nucleus	67.37	65.47
Zm00001d021426_P002	Maize	nucleus	67.11	65.38
HORVU5Hr1G054500.18	Barley	nucleus	67.37	65.31
Os07t0296200-01	Rice	nucleus	66.58	64.21
EER99320	Sorghum	nucleus	65.79	63.78
TraesCS5A01G178900.3	Wheat	nucleus	67.11	62.65
TraesCS5D01G183400.3	Wheat	nucleus	66.58	62.16
GSMUA_Achr8P27040_001	Banana	cytosol	14.21	52.43
GSMUA_Achr8P27030_001	Banana	cytosol	16.84	42.95
GSMUA_Achr6P27180_001	Banana	nucleus	67.37	41.9

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	EnsemblPlantsGene:Bra014245	EnsemblPlants:Bra014245.1	EnsemblPlants:Bra014245.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677	UniProt:M4DCM9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102	PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209
UniParc:UPI0002546171	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:

Description

AT1G50300 (E=3e-119) TAF15 | TAF15 (TBP-associated factor 15); RNA binding / nucleic acid binding / nucleotide binding / zinc ion binding

Coordinates

chrA08:+:2232995..2235571

Molecular Weight (calculated)

41824.0 Da

IEP (calculated)

9.283

GRAVY (calculated)

-1.263

Length

380 amino acids

Sequence
(BLAST)

001: MAGYSTKGAA PTNGSVYVSN LPLGTDENML AEYFGTIGLL KRDKRTGTPK VWLYRDKETD EPKGDASVTY EDPHAALAAV EWFNNKDFHG SIIGVFMAES
101: KNNKSGGDHP SESFGFDGGA ANKEIDGGAG RGRGQGDSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGGGGRGR GRGGGADGGP
201: PGKGASTGLF GPNDWSCPMC GNVNWAKRLK CNICNTNKPG QNEGGVRGGR GGGYKELDEQ ELEETKRRRR EAEQDDGEMY DEFGNLKKKY RVKTHQADAR
301: PAVAAGRAGW DVEELGVDRD GRERSRDRQR DRGDKHRDHH HYDKHRRRSR SRSRERERGK ERDYDRDRDR DYGRGSRYRN

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.