Factsheet for Solyc11g040050.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008230.2.1
Solyc03g122020.2.1
Solyc04g009180.1.1
Solyc04g078050.2.1
Solyc06g062900.2.1
Solyc06g073150.2.1
Solyc11g017300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G50300.1	Solyc03g122020.2.1	AT1G17440.1	17340043
AT1G50300.1	Solyc06g062900.2.1	AT1G17440.1	17340043
AT1G50300.1	Solyc04g078050.2.1	AT1G27720.1	17340043
AT1G50300.1	Solyc06g073150.2.1	AT1G71230.1	21798944
AT1G50300.1	Solyc11g017300.1.1	AT1G71230.1	21798944
AT1G50300.1	Solyc01g008230.2.1	AT5G08330.1	21798944
AT1G50300.1	Solyc04g009180.1.1	AT5G08330.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048896	Potato	nucleus	95.89	96.38
VIT_01s0010g01410.t01	Wine grape	nucleus	75.58	71.01
KRH24217	Soybean	nucleus	69.67	70.94
Os09t0299500-01	Rice	nucleus	29.05	70.62
KRH75898	Soybean	nucleus	34.7	70.31
CDY42510	Canola	nucleus	69.15	70.23
KRH62947	Soybean	nucleus	25.45	70.21
AT1G50300.1	Thale cress	nucleus	67.1	70.16
Bra014245.1-P	Field mustard	nucleus	68.12	69.74
CDY67548	Canola	nucleus	68.12	69.74
KRH29220	Soybean	nucleus	69.15	69.69
CDY03594	Canola	nucleus	67.87	69.66
Os07t0296200-01	Rice	nucleus	69.92	69.04
CDY22787	Canola	nucleus	66.84	68.97
Bra018839.1-P	Field mustard	nucleus	66.84	68.97
Zm00001d021426_P002	Maize	nucleus	68.64	68.46
EER99320	Sorghum	nucleus	68.64	68.11
TraesCS5B01G176600.1	Wheat	nucleus	67.61	67.26
HORVU5Hr1G054500.18	Barley	nucleus	66.84	66.33
TraesCS5A01G178900.3	Wheat	nucleus	67.35	64.37
TraesCS5D01G183400.3	Wheat	nucleus	67.35	64.37
GSMUA_Achr8P27040_001	Banana	cytosol	15.42	58.25
GSMUA_Achr6P27180_001	Banana	nucleus	72.49	46.15
GSMUA_Achr8P27030_001	Banana	cytosol	16.45	42.95

Protein Annotations

MapMan:15.3.5.3.15	Gene3D:3.30.70.330	Gene3D:4.10.1060.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000504	InterPro:IPR001876	InterPro:IPR012677
UniProt:K4D7X9	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50102
PFscan:PS50199	PANTHER:PTHR12999	PANTHER:PTHR12999:SF7	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SMART:SM00547	SUPFAM:SSF54928	SUPFAM:SSF90209	EnsemblPlantsGene:Solyc11g040050.1	EnsemblPlants:Solyc11g040050.1.1	UniParc:UPI0002769E18
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

Transcription initiation factor TFIID subunit 15 [Source:Projected from Arabidopsis thaliana (AT1G50300) UniProtKB/Swiss-Prot;Acc:Q9AST1]

Coordinates

chr11:+:40024447..40028245

Molecular Weight (calculated)

43072.5 Da

IEP (calculated)

8.453

GRAVY (calculated)

-1.155

Length

389 amino acids

Sequence
(BLAST)

001: MASYSGKGST LNGSVYVCNL PLGTDEDMLA EYFGTIGVLK KDKRSGRPKI WLYRDKVTNE PKGDATVTYE DPHAALAAVE WFNNKDFHGS MIGVFIAESK
101: NKDEASYVSV NQISEPNLNS GLAVLDEGSN DIDGGGGRGR GRGDASAKAW QQDGDWLCPN TSCTNVNFAF RGVCNRCGTA RPAGAGGGGA GAAGRGRGRG
201: SQDPGAPGRA VGGPPGLFGP NDWACPMCAN INWAKRNKCN ICNTNKPGHN EGGVRGGRAG GYKELDEEEI EETRRRRREA EEDDGEMYDE FGNLKKKFRA
301: KTQRAEAAQS LPPGVGRAGW EAEELGVAER DRKERSRERS RDYDDRERAR HRSRSRERDR GRDRDRSYDY DRDREYGRDR DRERNKYRH

Best Arabidopsis Sequence Match ( AT1G50300.1 )
(BLAST)

001: MAGYPTNGSV YVSNLPLGTD ENMLADYFGT IGLLKRDKRT GTPKVWLYRD KETDEPKGDA TVTYEDPHAA LAAVEWFNNK DFHGNTIGVF MAESKNKNAG
101: DAVEFVEFDG GAEETNGGAG RGRGQADSSA KPWQQDGDWM CPNTSCTNVN FAFRGVCNRC GTARPAGASG GSMGAGRGRG RGGGADGGAP GKQPSGAPTG
201: LFGPNDWACP MCGNVNWAKR LKCNICNTNK PGQNEGGVRG GRGGGYKELD EQELEETKRR RREAEEDDGE MYDEFGNLKK KYRVKTNQAD TRPAVAAGRA
301: GWEVEELGID KDGRERSRDR QRDRGRDHHY DKDRRRSRSR ERERGKERDY DYDHDRDRDR DYGRERGSRY RN

Arabidopsis Description

TAF15Transcription initiation factor TFIID subunit 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9AST1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.